UFO04421.5prime Sequence
418 bp (-60 high quality bases) assembled on 2009-02-25
> UFO04421.5prime
CTTACCTTCTTATTTCATATATTATACGAAGTTATCTTCGACATGAACGT
AGTAAAATCTTTGTGTATTTTGGGTCTGGTTCTCGTCAGCTTGATTGCCA
CCCAAGCATCCGATGAGCAGGTGGTAGGCGGTGTCAGCCAGTTGGAGGGA
AACAGCAGGAAGGAGGCTCTGGAACTTCTGGATGCCACTCTCGCACAGTT
GGCCACCGGAGATGGTCCCAGCTACAAGGCAATCAATGTGACCTCTGTGA
CGGGTCAGGTCGTATCTGGAATTCTTAACACCTACGAGGTGGAACTTGAC
AATGGATCCGACAAAAAGCAGTGCTCCGTGAAGATCTGGACTCAGCCATG
GCTCTAGGAAAACGGCTCCTTCATCAAGATCAAGTGCTCTGGTGACGATG
GTGAACTGGACCGCACCT
UFO04421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cys-RA | 484 | CG8050-RA | 35..412 | 41..418 | 1740 | 97.4 | Plus |
| CG8066-RB | 703 | CG8066-RB | 81..372 | 124..418 | 715 | 83.8 | Plus |
| CG8066-RA | 1173 | CG8066-RA | 81..372 | 124..418 | 715 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14569423..14569610 | 228..41 | 925 | 99.5 | Minus |
| 3R | 32079331 | 3R | 14569175..14569365 | 418..228 | 820 | 95.3 | Minus |
| 3R | 32079331 | 3R | 14568432..14568599 | 395..228 | 390 | 82.1 | Minus |
| 3R | 32079331 | 3R | 14568663..14568767 | 228..124 | 315 | 86.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:10 has no hits.
UFO04421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:15 Download gff for
UFO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cys-RA | 32..409 | 41..418 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:23 Download gff for
UFO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cys-RA | 35..412 | 41..418 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:56 Download gff for
UFO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cys-RA | 35..412 | 41..418 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:56 Download gff for
UFO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14569175..14569365 | 228..418 | 95 | <- | Minus |
| 3R | 14569424..14569612 | 39..227 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:23 Download gff for
UFO04421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10395146..10395334 | 39..227 | 98 | <- | Minus |
| arm_3R | 10394897..10395087 | 228..418 | 95 | <- | Minus |
