UFO04425.5prime Sequence
1145 bp (1029 high quality bases) assembled on 2009-02-25
> UFO04425.5prime
CAGTCGACATGCTGCGTTTGCTTACAAAAACAAGGGTGCTGCGCCAACTG
ATGCCAGCGACAGGCGCCACTCCACCTGCATCCCGCTTCTATGCGAAGAA
CCAAGGAGCAGCCAGCCAAAAATCGGATGACGACATGGTCAGCGATGAGC
CCATCAAGTTTTTCGGCAGCCAGGCGGCCACTTGGCGCGCCAAGGACACC
CGCAGTGGTGGCAGCGACGAGACCCTTTGGTACCAACCCTACGTAATCTC
CGCCAGCCTGGCCATCTTCCTCCTGTACTTCTGTGCGCTGCGCGAGGAGA
GCGACATCGATCTCCGGTTGGAGGGCAACTTGTACGAGCATGTCAGTGGT
CTGGAGGAGGTGCAGCTGACTGTCAACTACAGGTACAACAAGGAACACGG
ACTGGACACCAAGGAGCAGGAGAGACGGCTCAGGGAACTGGGCGTTGATC
TGGGCCAGTTGGATGCCAAGTTGGCCGCCCAGGCAAGCTTTCTAGACCAT
TCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCA
TAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTG
GATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAA
TCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAG
CGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGT
TGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATG
ATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAAT
ATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACG
TTTAAATCAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAAC
ATATTTCTCATAAACCCTTTAGGGAAATAGGCCAGGTTTTCACGTACACG
CCACATCTTGCGAATATATGTTGTAGAACTGCGAAATCGTCTTGTATTCC
CTCCAGAGGCGGATGAAACGTTTCAGTTTGCTCATGGAACGGTGTAACAA
GGGTGAAACTATTCCAATATCCACAGGTTCACGCTTATTGGCATA
UFO04425.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30373-RB | 720 | CG30373-RB | 179..652 | 9..482 | 2370 | 100 | Plus |
| CG30373-RA | 610 | CG30373-RA | 69..542 | 9..482 | 2370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8164068..8164507 | 482..43 | 2200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:17:27 has no hits.
UFO04425.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:12 Download gff for
UFO04425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30373-RA | 57..538 | 1..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:51 Download gff for
UFO04425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30373-RA | 61..542 | 1..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:13 Download gff for
UFO04425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30373-RA | 61..542 | 1..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:13 Download gff for
UFO04425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8164068..8164506 | 44..482 | 100 | <- | Minus |
| 2R | 8164568..8164610 | 1..43 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:51 Download gff for
UFO04425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4051573..4052011 | 44..482 | 100 | <- | Minus |
| arm_2R | 4052073..4052115 | 1..43 | 93 | | Minus |
