UFO04427.5prime Sequence
1127 bp (1002 high quality bases) assembled on 2009-02-25
> UFO04427.5prime
CAGTCGACATGGCCGCCGGACTGTCCAATTCAGCAGTGCATATCTATAAT
TTGGATTCGGGCGCCGGGAAACTGGAGAACTTTAGCTATCTGCCGCCCAC
AGATTCGCCGCAGAGCGTAAGCATCTGTGGCGTTCGTTTCCTCGACGAAG
GACCACACAACATCCTGGTCGGCACCACCGATGGCTACGTGCGCCTCTAC
GATCTGCGGCTAAGAGGCGAACAGGCGCGGTTCAAGTACACGCAGCACCC
TAATGTGCCTCCGGTGCCCAAATCGCTTTCGTGCTTCGACAGAAACGCCA
ACGGTCGGATTATTTGCTGCGGCACCGAACAGTTTCACAGCAACGCGTTC
CTCGTGTTCTTCGATGTTCGGGAGCGCCAGCAAATGGGCGTCTACTTCGA
AAGCCATGAGGACGATATCACCTCGTTGCGGTTCCATGCCCAGAATCCAG
ACCTTCTGGCCACGGGCAGTGTGGACGGGCTAGTAAACGTGTTCGATGTG
AAGGAGCCGGACGAGGATGAAGCACTGCTTAACACCTTCAACACGGAGAG
CAGTGTGGCCCGGTTGGCGTGGCACAGAAACGTCTACGACAAGGACATCA
TATCCTGCGTCACGACCACTGGCGATTTCAAGAGCTACGAGTGCGAGGAG
GGCGACGAGGTGGCATCCTTCGAGCGGCCGGATGTTACGGCGGCAATAAG
GAGAAAAAAAGCCGCAAACTTCAACCTGATAAATGCCCACAATCAGGAAG
ACGGAGGAGTCTTTCTGTTGGCGGGCACCAACTTCAACAAGGGCGAGATC
CTGCGCTCCGTTAGCGTTACCTCGAAGACAGCCTCCAGCCATTGGCCAAT
TTCCAGGGAAACAAGCAGATCGTCAGAGATAGTCTTTTCGATTCAAGAGA
AGTTTACTTTTTACAGGGGAGATCCGGCATTGTTACGGTTTGGGCACAGG
ACGCAAGTGGAACGGCGTTCAGCAGTGAAAAACTGAAGGCAGGAGGAGAA
GAATCACGCAAGCAAGCGCCTATTGCAAGCTTTCTTAGACATCGTTGGCG
GCGCGGGCCCAGGTATGGCCTAATCATAATCTAATCTATCTATCACACTA
GCCTAGGAATCTGCCTGACTATGCTGA
UFO04427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12134-RB | 1581 | CG12134-RB | 517..1535 | 9..1020 | 4920 | 99.3 | Plus |
| CG12134-RA | 1526 | CG12134-RA | 462..1480 | 9..1020 | 4920 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9971659..9972443 | 9..793 | 3925 | 100 | Plus |
| 2R | 25286936 | 2R | 9972500..9972734 | 793..1020 | 830 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:01 has no hits.
UFO04427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:11 Download gff for
UFO04427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RB | 318..1348 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:23 Download gff for
UFO04427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 457..1487 | 1..1028 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:11 Download gff for
UFO04427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12134-RA | 457..1487 | 1..1028 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:11 Download gff for
UFO04427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9972501..9972745 | 794..1029 | 95 | -> | Plus |
| 2R | 9971654..9972443 | 1..793 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:23 Download gff for
UFO04427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5859159..5859948 | 1..793 | 99 | -> | Plus |
| arm_2R | 5860006..5860250 | 794..1029 | 95 | -> | Plus |
