UFO04428.5prime Sequence
1140 bp (1016 high quality bases) assembled on 2009-02-25
> UFO04428.5prime
CAGTCGACATGACTGCGAGCAAGGAAGGTCAAGAATCCAGGCGAACCCTC
AGCGACAGTTCCGCAGAGGACGTCAGGAATACAGGATCGAGGACCAGGAC
CAACGACGACGAAATGTGGCGCAATGAACTTGCTATGAACACGGACAGCA
GCTCCGTTCAGCCAGAAAAGCGAGAGGAACGAAGCCACAGAACAGGAAAC
TCTAATGCGAAGCTCAGCGATGCCGTAGATGTTGTTCTTCGCGTTCTCCT
CGTCATTACCTTCTTCAAGTTGGAGACGATGACAGCATTCAAACGGGAAA
TCCACGAGGAAGAGCTGTGGCTATACAAGAACCCAAGGCGACCGGACATT
GTCAGGGGCGGGGAGCTGCTCTTCTGGGTGATAGTGGCTCCCTTTCTGGT
CACTATCGCCTTCTACTGGTACACAAGAGACAGGCGGGACTTTAGAGCCG
CCAGCTGGGCCTGGACACTGGCCCTGTGCATGAACGGCATCCCAACGAGC
GTACTAAAGATAACAGTGGGGCGGCCCAGGCCCGACTATTTTTACCGCTG
CTTTCCCGATGGCGTGATGGTGCTTAACACAACGTCAAATGGCGTGGACA
CCTCCATCCTGGATTTCAATTGCACAGGGCTTCCGGGCGACATAAACGAA
GGCCGCAAGAGCTTCCCCAGCGGACACTCGTCGTTCGCCTTTGCGAGTTT
CGGTTTCATTGCCTATTACATTGGCGCCAAGCTGCACGCCTTTGATAGCC
GGGGACGCGGCCACACCTGGCGGCTCTGCATCGCTGTGATACCTCTGTTT
ATCGCACTGCTGGTTGCAGTTAGTCGCACCTGCGACTACCACCACCACTG
GCAGGATGTGACCATCGGCGGGCTGATTGGCCTGTTTGCAGGCTATATAA
GCTACACACAATACTATCCCTCCATCTTCTGCCCTGATGCGGGATACCAC
TGGTCAGGGGGGCCAGCAGAGAGGGAAGCCAGTATCACCGACTGTCCGGG
AAAGGACGACAATGGCAGTCGTGGTCCCACCATCTCGATGTTGGATGCGT
GCGAACTCTGCTCGCTGACAGGAGGATCCATGGTACGCAAGCTTTCTAGA
CAATTCTTTGGCGCGCGGGCCCAGCTAGTGCCTATCATAT
UFO04428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12746-RE | 1509 | CG12746-RE | 339..1418 | 5..1076 | 5050 | 98.2 | Plus |
| CG12746-RD | 1381 | CG12746-RD | 211..1290 | 5..1076 | 5050 | 98.2 | Plus |
| CG12746-RB | 1339 | CG12746-RB | 169..1248 | 5..1076 | 5050 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5566467..5566885 | 266..684 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 5566945..5567305 | 685..1044 | 1555 | 97.2 | Plus |
| 3R | 32079331 | 3R | 5566138..5566398 | 5..265 | 1290 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:37 has no hits.
UFO04428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:10 Download gff for
UFO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12746-RE | 335..1431 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:23 Download gff for
UFO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12746-RB | 165..1261 | 1..1086 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:31 Download gff for
UFO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12746-RB | 165..1261 | 1..1086 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:31 Download gff for
UFO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5566134..5566398 | 1..265 | 98 | -> | Plus |
| 3R | 5566467..5566885 | 266..684 | 100 | -> | Plus |
| 3R | 5566945..5567357 | 685..1086 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:23 Download gff for
UFO04428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1391856..1392120 | 1..265 | 98 | -> | Plus |
| arm_3R | 1392189..1392607 | 266..684 | 100 | -> | Plus |
| arm_3R | 1392667..1393079 | 685..1086 | 95 | | Plus |
