UFO04429.5prime Sequence
1126 bp (1018 high quality bases) assembled on 2009-02-25
> UFO04429.5prime
CAGTCGACATGGGAAATGAAACATCACTGCCCATGGAAATGTGTTCCAAT
TTCGACGCCGACGAGATCCGGCGGCTGGGCAAACGTTTCCGGAAACTGGA
CCTGGACAATTCGGGCGCGCTGAGCGTGGACGAGTTCATGTCGCTGCCGG
AGCTGCAACAGAATCCGCTGGTGCAGCGCGTGATCGACATTTTCGACGCG
GACGGCAACGGCGAGGTGGACTTCAAGGAGTTCATCCAGGGCGTGTCGCA
GTTCAGCGTCAAGGGCGACAAGCTGTCCAAGTTGCGCTTCGCCTTTCGCA
TCTATGACATGGACAACGATGGTTACATTTCCAATGGCGAACTGTTTCAG
GTTTTAAAGATGATGGTAGGCAATAATCTGAAGGACACGCAACTGCAGCA
GATTGTGGACAAGACGATCGGATTCGCGGATAAGGATGAGGATGGCAAGA
TCTCGTTCGATGAGTTCTGCTCTGTGGTCGGCAACACGGACATTCACAAG
AAGATGGTAGTCGATGTCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATTTGCCCATGGTGA
AAACGGGGCGAGAGTTGTCCATATTGGCCACGTTTAATCAAACTGGTGAA
CTCCACCCAGGGATGGCTGAGACGAAAAACATATTTCTCATAAGCCCTTT
AGGAAATAGGCCAGGTTTTCACGGTACACGCCCCATCTTTGGCGAATTAT
TTGTGGTAGGAAACTGCCGAAATCGTCTTGTTATTCCACTCCAGGAGGCG
ATGAACGGTTCAGTTGCTTATGAACG
UFO04429.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CanB2-RB | 2061 | CG11217-RB | 257..766 | 9..518 | 2550 | 100 | Plus |
| CanB2-RA | 1143 | CG11217-RA | 257..766 | 9..518 | 2550 | 100 | Plus |
| CanB-RB | 1148 | CG4209-RB | 103..612 | 8..517 | 1410 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7787234..7787533 | 52..351 | 1500 | 100 | Plus |
| X | 23542271 | X | 5333404..5333913 | 8..517 | 1410 | 85.1 | Plus |
| 2R | 25286936 | 2R | 7787589..7787758 | 349..518 | 850 | 100 | Plus |
| 2R | 25286936 | 2R | 7786499..7786539 | 11..51 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:58:40 has no hits.
UFO04429.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:09 Download gff for
UFO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 255..767 | 9..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:48 Download gff for
UFO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 9..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:38 Download gff for
UFO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CanB2-RA | 257..769 | 9..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:38 Download gff for
UFO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7787234..7787532 | 52..350 | 100 | -> | Plus |
| 2R | 7787591..7787758 | 351..518 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:48 Download gff for
UFO04429.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3674739..3675037 | 52..350 | 100 | -> | Plus |
| arm_2R | 3675096..3675263 | 351..518 | 100 | == | Plus |
