UFO04430.5prime Sequence
1170 bp (1044 high quality bases) assembled on 2009-02-25
> UFO04430.5prime
CAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGATCCAACAAC
AACGATTTTCCCATACTTCCGCCACCGCCGAACGCGAATGACAACTACAA
TCAATTCGGTGACCATCAAATCAGGAACAACAATGCAGCCCAGAAGAAGC
TGCAGCAGACCCAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTG
AACGTGGAGAAGGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGA
GCGTGCGGATCAGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCG
GCAAGCTGAAGCGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATT
CTGGGCGTGATAGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCGCTTTT
CAATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTG
GTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGA
TCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCG
GCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTG
GATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCC
CTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACAT
GGAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGC
ACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAA
GAAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCC
AGGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
ACTGCCGGAAATCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCA
GTTTGCTCATGGAAACGGTGTAAAAGGGTGAACACTATCCCATATCACCA
GCCTCACCGTCTTTTCATTGCCATACGAATCGGAAGAGCATTCATCAGGC
GGGCAGAATGTGATAGCGATAACTTGGTGCTTATTTCTTCTTACGGCTAA
GCGCGTTATATCAGCTGAAC
UFO04430.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Syb-RB | 1139 | CG12210-RB | 147..542 | 9..404 | 1980 | 100 | Plus |
| Syb-RC | 921 | CG12210-RC | 147..532 | 9..394 | 1930 | 100 | Plus |
| Syb-RD | 1070 | CG12210-RD | 194..473 | 125..404 | 1400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10250879..10251213 | 390..56 | 1675 | 100 | Minus |
| 3L | 28110227 | 3L | 1635328..1635439 | 311..200 | 245 | 81.2 | Minus |
| 2R | 25286936 | 2R | 10251928..10251974 | 55..9 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:23:33 has no hits.
UFO04430.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:08 Download gff for
UFO04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 131..534 | 1..404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:47 Download gff for
UFO04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 139..542 | 1..404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:23 Download gff for
UFO04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Syb-RB | 139..542 | 1..404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:23 Download gff for
UFO04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10250879..10251213 | 56..390 | 100 | <- | Minus |
| 2R | 10251928..10251978 | 1..55 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:47 Download gff for
UFO04430.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6138384..6138718 | 56..390 | 100 | <- | Minus |
| arm_2R | 6139433..6139483 | 1..55 | 92 | | Minus |
