UFO04433.5prime Sequence
1162 bp (1034 high quality bases) assembled on 2009-02-25
> UFO04433.5prime
CAGTCGACATGGATATGAACTACCAGTACAAGAAGGACCACTCGTTCGAC
AAGCGCCGCAACGAAGGCGACAAGATCCGGCGCAAGTATCCGGACCGTGT
GCCCGTCATCGTGGAAAAGGCGCCGAAGACGCGTTACGCGGAGCTGGACA
AGAAGAAGTACCTGGTGCCGGCGGACCTGACAGTGGGCCAGTTCTACTTT
CTCATCCGCAAGCGTATCAATCTGCGTCCCGACGACGCCCTCTTCTTCTT
CGTAAACAATGTGATCCCACCGACATCGGCCACCATGGGTGCACTGTACC
AGGAGCACTTCGACAAGGACTACTTCCTCTACATTTCCTATACCGATGAG
AACGTCTATGGACGGCAGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAATCG
CCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGTG
AAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAAACT
GGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAATAA
ACCCTTTAGGGAAATAGGCCAGGTTTTCACCGTAACACGCCACATCTTGC
GATATATGTGTAGAAACTGCCGGAATCGTCGTGTATTCCCTCCAGAGCGA
TGAAAACGTTTCAGTTTGCTCATGGAAACGTGTAACAAGGTGAACACTAT
CCCATATCACCAGCTCACGTCTTTCATGCATACGAAGTCTGATGAGCATC
ATCAAGGCGGCAGATGGTGATAAGCCCGATAAACTTGGCTATTTTTCTTT
ACGTCTTACAGGGCGTAATCAGCTGAACCGCTGGATTTAGGTAATGGAGC
ACTGCACCTGAA
UFO04433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8b-RB | 654 | CG12334-RB | 154..513 | 9..368 | 1800 | 100 | Plus |
| Atg8b-RA | 609 | CG12334-RA | 135..494 | 9..368 | 1800 | 100 | Plus |
| Atg8a-RA | 1214 | CG32672-RA | 269..606 | 15..352 | 775 | 82 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17724551..17724910 | 368..9 | 1800 | 100 | Minus |
| X | 23542271 | X | 10765604..10765802 | 303..105 | 470 | 82.4 | Minus |
| X | 23542271 | X | 10767979..10768070 | 106..15 | 235 | 83.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:47 has no hits.
UFO04433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:07 Download gff for
UFO04433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8b-RA | 127..494 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:18 Download gff for
UFO04433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8b-RA | 127..494 | 1..368 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:05 Download gff for
UFO04433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8b-RA | 127..494 | 1..368 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:05 Download gff for
UFO04433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17724551..17724917 | 1..368 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:18 Download gff for
UFO04433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13550273..13550639 | 1..368 | 98 | | Minus |
