UFO04434.5prime Sequence
1111 bp (1003 high quality bases) assembled on 2009-02-25
> UFO04434.5prime
CAGTCTCCTTGGAGGAGCTAATGAGGCAGAACGGACAGAAATGCGAGAGG
CAGGAACTCACCTGCAGCCTTTTATTTACCAATCCCAAGCTTAGTGCCGA
GAAGTTATCCTCCAATGATGAAATAAACTCCATTGCGAGATTCGTATCGA
AGGCGGAGGATCTCGAAATGCATAGAGTGTTCAGTAAGATATCAAAGAAT
GGTGTCGAGGAGACCACGTCTCTGAATCGCTCCCTCTTCGAGTTCGGTCA
TAATTTCGAGGATGCCGATGGCTGGCTGAAACTGGAGCAGCCTTGCAAGG
ATCGGCTGGCCACGGTGCTGCGCTACATGTTCGAGTCCCATCTGAAGACC
ACTGTGCAGATAGAAATCAACAATATGTACTTCAATTGCCACTTCATCGT
GCTGCAGGTGTACTCTCGCTTCTTTAGTGAACTGGAGATGATTCCGCTGC
TGGTCACCCTGCCCGAGAAGATCGTGTCCCAGAAGGCCTTTATGCTCTCC
TACAAATGGATGCTGAGCGATGAGCCCGTCCTGGAGCTGGCTCACATTGT
GGAGGTCTATGTGGCCGCCACTTATTTGAGGATCTCTGGTCTGGCGGCGC
ATTGTTGGAAATATTTCGATGATGAGGAATACTACAACGAGGATACGGCA
TGTGTCCTATACGTCGAGTCGAAGGACAATCCCGCCATGGATGTAGTTCG
CAATTTGATGCTGACTAGGATCCGCAAGTTTCTGCTCACCTTTGTGGCCA
CCAGGGATTTCCTCGATCTGCCGACCTCCCATCTGATTTTTTTGCTCGAA
TCCGATCAAATCTGTGTGAACACCGAGATTGAGTTTTCTTTATAGCTGTT
CGATGGCTGGGTCACGATTGGAACAAGAGGAAGTGCACGTACGTCGTTTA
ATGTCCTGTATTCGATTCAACCTGATGCCATTGTTGTATCCTACTATTAT
GCGCGACGGGAGGAGGATCACCCGGTTGGTGATGAAGCTGATTTTCACCC
GGAGGTGGAGTACAGATCGACGAAATCCATTACCAGAATAACCTCCCCGC
ATGTTCAAGGAGCCTTGGAGGGCAATGACGCCCCCAAGTGAGGAAATACC
CAGGTGATTTC
UFO04434.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12857-RA | 1584 | CG12857-RA | 48..1145 | 10..1109 | 5015 | 97.6 | Plus |
| CG12857-RB | 1571 | CG12857-RB | 48..1132 | 10..1109 | 4845 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14758675..14759425 | 833..83 | 3755 | 100 | Minus |
| 2R | 25286936 | 2R | 14758372..14758619 | 1081..833 | 695 | 93.3 | Minus |
| 2R | 25286936 | 2R | 14759483..14759555 | 82..10 | 350 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:17:36 has no hits.
UFO04434.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:14 Download gff for
UFO04434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 34..1124 | 4..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:58 Download gff for
UFO04434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 42..1132 | 4..1095 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:18 Download gff for
UFO04434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12857-RA | 42..1132 | 4..1095 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:18 Download gff for
UFO04434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14758359..14758619 | 834..1095 | 91 | <- | Minus |
| 2R | 14758675..14759425 | 83..833 | 100 | <- | Minus |
| 2R | 14759483..14759561 | 4..82 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:58 Download gff for
UFO04434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10645864..10646124 | 834..1095 | 91 | <- | Minus |
| arm_2R | 10646180..10646930 | 83..833 | 100 | <- | Minus |
| arm_2R | 10646988..10647066 | 4..82 | 93 | | Minus |
