UFO04436.5prime Sequence
1104 bp (1033 high quality bases) assembled on 2009-02-25
> UFO04436.5prime
CAGTCGACATGAAGAGAGTCCATGTGGACAACTACACACCGAAGTACTAT
AGTGGCAAGTGGTCCTGGAGCGCCGAAAAGGATTGCCTGGAATTCGAGCC
GCACAACGATCTGGAGAATGCCAGGGAGCGCTACATCACCACCAATGGCT
ATAAGTTCCTGCGCATCATCGACCAGGAGGAGGAGCTTATCTTCCGGCAG
GCTTACGTGCGGGATACGGGCACCTATGACTTTGACACCTTGGTGATCAA
CGACATCCGTGACCTGGTCCTCTTCCTGATGCCCAGCGATTTTCTGACCT
ACCGGTTCGTGGAGTTCATGCACCGCCCGGCGGTTCACCGTCTGATCCAT
GCGCTCATCATTTATTTCGAATACTTTCTGCGTATGGTGGAGTTTGTGCT
GGTGCGGCGCGACGAATTGGCCGATCAGATCCAGAGCGATCAGACCATCG
ATATGAAGAAGACATTCTCGATCTATCTCAGTCAGTATCGCCTCCTGGTG
GCCCGCAACTACAGTGTGATTCTGAAGGGAGAGGGCGATATGGCCAAATA
CTACCATATGAAGGAGATTATCAATATTTCGGATACCAGTCGCGACCGCG
TCTTCCACGAGCAGTTTCTGGCCGTGATGACCCAGATTGTTTGGATCTGC
ATGCATCGCCGTGCGTACAATGTCATTGAGATGGAAATGAACCGTCTGTT
TCGTTCCGATCACTTTGTTATGGCACGTCCGGAGTATCTGAGCTTTACGC
CGGCGGAGCGCAGTTTACTGTACGGTCGGAACCATAAAATCGTTAACTAT
CGCACCCAGATATCGCCGCTCGTCCAGGAGTTGGAGCACGTGGCGGAGGA
GGACATGCCCATCCTGTGGATTGGCGAGCGAAAGTACCGAGGCAACGACA
AGCGCATTGCCGAGATGGAGCTGGAGTACATTGTGCCGGGACCACAGCTG
CGTATGATCGATGTGGCACACGGCATACTGGGACATTCGGATGATTTGTA
CAACACCATCCTAGACCTGGACTGGCCACAGGTTCGCTACTCAACTTTTC
GCTTTGGCTTACGATCCGTAACACAATTCATTCGCCAGGCCGCACTTGGG
ACAA
UFO04436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14689-RA | 1661 | CG14689-RA | 109..1196 | 8..1099 | 5205 | 98.8 | Plus |
| CG31391-RA | 1704 | CG31391-RA | 87..1136 | 9..1051 | 820 | 73 | Plus |
| CG31467-RA | 1694 | CG31467-RA | 552..1113 | 425..986 | 440 | 72.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10710093..10711140 | 1054..8 | 5070 | 99.1 | Minus |
| 3R | 32079331 | 3R | 10703948..10704560 | 1044..432 | 485 | 71.9 | Minus |
| 3R | 32079331 | 3R | 10704797..10704989 | 201..9 | 470 | 82.9 | Minus |
| 3R | 32079331 | 3R | 10705751..10706312 | 986..425 | 425 | 71.7 | Minus |
| 3R | 32079331 | 3R | 10706542..10706722 | 201..21 | 395 | 81.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:16:16 has no hits.
UFO04436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:13 Download gff for
UFO04436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14689-RA | 103..1198 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:02 Download gff for
UFO04436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14689-RA | 103..1198 | 1..1102 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:55:33 Download gff for
UFO04436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14689-RA | 103..1198 | 1..1102 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:55:33 Download gff for
UFO04436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10710051..10711143 | 1..1102 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:02 Download gff for
UFO04436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6535773..6536865 | 1..1102 | 98 | | Minus |
