UFO04437.5prime Sequence
1128 bp (1038 high quality bases) assembled on 2009-02-25
> UFO04437.5prime
CAGTCGACATGTCCCTGGTTTATATCACCCATCACGATGAGAATATTCTC
GAGTGCGAGCAGGACTTTGTGAAGGCCCAAGGACCTAAGGAATCAATTTT
TGTCTACAAAAATCCTGTTGTGGAGAGGGCAGCCAAGTATGCCAAGAGAC
TTCGCGAACGCTTTAACGAGGAGGACAAGAAGCTATCGATTATCCTCCAG
AACGATGGAACCCGCGTCCTGACAGAGGCCAAGAAATCAGCCCACCGCAC
CATGGGCTGTGCTCACACTCCGATTGACCCACCGTGCGCCTATTTGCGCA
AGAGCCAGGGCATCAAATGGCGGCGAGAGAACACCCACAAGTGTCCCAAG
ATGCCGCCAATGCCCCCACTACCACCACCGGGCAGTGGCGGCAAAAAGCC
GGCAATGGTACCTAACTTCATCAAACGCAACAAGATATGTGCCGGACAAA
CGGTTCCCTGTCCCCCGCCACCTCGTTATGTAGACACTCCCGTGGGAGCT
CGTCACGATCTACTCAATTCCGGATTGGTACCGCAGTTTATCTGCCGCAA
GGATTTCGGCAAGGTGCCTGTTTACCTCAAGAAAACCAAGAGGATGTTGG
CCGACATGAATGCGGTGTGTGCCAAGGAACAGGCACGTTTGCTGGAGCTG
TGCCGCGGTATCAAGGGTTTCACCAGGGCATCCGTCCAATCAAGTGGTCC
GCCGCCAATGCCGGGTATGCGGGTGATGGAGCAGGCCGAGCGAAATGAGA
TCCTCGAGGGACTGCGACTGAGCCTGACCGAGATGACCAAGCAGTATCAG
TCGATGTCGCTCCTTATCGACAGCATCGCCAAGCGGCAGCGCAAAAGCAA
GCTGGAGTCCGATCTTCGCCAGGTGGAGCAGGACATTCTGCTAATCGAGA
CCACTCCCATTATCTATGTTTCCGAGTACGCAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATAATCATATCATAATCA
TAATCACACTAGCTAGGGGATCTGGTCATGACTAGTGCTTGGATTCCTCA
ACAATAAAAAACGCCCCGGCGGCAAACGAGCGTTCTGAACAATTCGAAGT
GGGGTTCTGAGTATACTGGATCATATAC
UFO04437.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16984-RA | 1162 | CG16984-RA | 90..1010 | 9..929 | 4605 | 100 | Plus |
| CG12182-RC | 3493 | CG12182-RC | 2489..3303 | 929..115 | 4075 | 100 | Minus |
| CG12182-RC | 3493 | CG12182-RC | 3360..3465 | 114..9 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2596032..2596846 | 115..929 | 4075 | 100 | Plus |
| 3L | 28110227 | 3L | 2595870..2595975 | 9..114 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:59 has no hits.
UFO04437.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:04 Download gff for
UFO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16984-RA | 58..978 | 9..929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:32 Download gff for
UFO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16984-RA | 90..1010 | 9..929 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:57 Download gff for
UFO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16984-RA | 90..1010 | 9..929 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:57 Download gff for
UFO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2595870..2595975 | 9..114 | 100 | -> | Plus |
| 3L | 2596032..2596846 | 115..929 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:32 Download gff for
UFO04437.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2595870..2595975 | 9..114 | 100 | -> | Plus |
| arm_3L | 2596032..2596846 | 115..929 | 100 | == | Plus |
