UFO04438.5prime Sequence
1172 bp (1057 high quality bases) assembled on 2009-02-25
> UFO04438.5prime
CAGTCGACATGGAGTCTGCTAAAGTCCTAAATAAACTATTGAAGGAAGCT
CCCAAAGATTCAAAAGGAAGCAAAGAGATTGAAGAGTTACGAAACCTGAT
CATAGAGCTGATGAAACCACGACTGGGACAACTACTTCAGATACTAAAGA
CTCGCATGATAGCTTCCACTCGAGATGAGTTTCAAGATGAAAATGAAGAC
TGGTGGCCAGATTATGAGCTATTATCAGCAGACTGGAGAGCCTTCACAGA
TATGAATGGTCTTTTAGTCTGCACTCAGAATGCTTTAAAGGGACTACCGG
GTGATCTTAAGGCCATTGGTGAAAAGTTCGATTATGCCTATTCCGTTGCA
AAGCCTATAACTGCTCGAAATAAGACCAAAAACTATTTTTTAGTAGTGGA
ACTTATAGAGGACATGGAGGACTTTGTAACGCACCTCAGCCGCCTGTGTA
GCAAGAATCTGGACGAGCGAAGGGACCTATACGATCTGGCTTCGATAACT
AAAGATACTGGCGATAGAATCAAGGTGAAAGTCTTCGATGAACGCATCTT
TGTGCAATTGCAGTCGCGAATTGCAAGTCTTAGGAACTACATAAGGGACT
TCTGTGCCCTTTTCGATGCCCACTTGGAGTCCGAAGAGGAGGATGAATTC
GAAACATTAGATATGTTGGCAAAACCCCAAGGACCACTTGCCACGGGAAC
CAATGCTGATAAGGCCCGGACTGCAAGCTTTCTAGACCATTCGTTTGGCG
CGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAAT
CACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACC
AATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGA
GTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGAT
TATCAAATTACGCCCCGCCCTGCCCCTCATCGCAGTACTGTTTGTAATTC
ATTAGGCATCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTG
AATCGCCAGCGGCATCAGCCCCTGTTCGCCTTGCGTATATATTTGCCATG
GGGGAAACGGGGGCGAAGAGTTGTCCTTTGGCCACGGTTAATCAACTGGT
GAACTCACAGGATGCTGACAAA
UFO04438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17744-RA | 926 | CG17744-RA | 46..760 | 8..722 | 3560 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7025967..7026431 | 722..258 | 2325 | 100 | Minus |
| 3L | 28110227 | 3L | 7026499..7026749 | 258..8 | 1240 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:56 has no hits.
UFO04438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:03 Download gff for
UFO04438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 30..752 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:30 Download gff for
UFO04438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 43..765 | 1..728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:56 Download gff for
UFO04438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17744-RA | 43..765 | 1..728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:56 Download gff for
UFO04438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7025962..7026431 | 258..728 | 99 | <- | Minus |
| 3L | 7026500..7026752 | 1..257 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:30 Download gff for
UFO04438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7019062..7019531 | 258..728 | 99 | <- | Minus |
| arm_3L | 7019600..7019852 | 1..257 | 98 | | Minus |
