UFO04442.5prime Sequence
1125 bp (1033 high quality bases) assembled on 2009-02-25
> UFO04442.5prime
CAGTCGACATGGAGGAGGCTCAAGTGGATAAACGAATTCGATTGCAGGAC
TTGCCGGCTGAGGTGCTGCATATGGTCATGGGCCATTTGGACCTATATCA
CCACAAGTTGCTGCGGGAAACTTCGGAGGAACTGAAGCAAATCAGCACGG
CGTACATATTGCATCATCACAAGGCCTACGAGGTGGCCCATTCGGAAGGA
ACCTCGGAGAAGGAGCAGAGTAGCGCGAAAAGGATCATGCTGCAGGTCCT
GCGCACGACAATTAGCTACTTTTCCGACGAAGACAGTGAATCCGACGTAG
CCATCAGTCTGCTGCACTTCCACTCTAAGGAGGCTGTTTTTTATAACGAA
GCTGACCATCTGGGCAAGTTCCTTGCCCATTTCCTGTTCCTCAATGAGCG
AACGTTCAACGTATTCAGTGCTGAGAGACTGAAGCTTAAGCGCCTCCATT
ACACAATGGCAATTTTCGGCCTATTGCGACAATTTCGAAATTTTAGAATC
CTGGGATTCGGTAAGACCATTTGGCACTGGAACGTGGAGGTCGAATTGAG
CAACACATTCATCGGTGTCATTGGAGAGGCAAAGGCCAGCTTCAATACTG
TGGAGTCCCAACGACGCATCTACTTCATTTCCATTCTGGCCGAGCTGCTC
TTCCACGAGAAGAGCAATCAGAACTATGGTGGACAGAGGGGCTTGGAAGG
CACTTTGTACACCTACAGTATTCAGCCAAATTCAAAAGCCAAGCGCACTC
CTCGAATGTTTATAAAGTTTATAGTGGAGGGTCCGCAGTTTCTAATTGAT
TACCTGAAAGGACCTAATTAGCGGAGACGAAGATCCTCACAATTCGTTCG
ACTTGCCACCAGGAACGGACTTTGCCATTCGAGTTGAGACCAGGTGCTTT
AAAGGACCCAAATTTGTATATTTGGGAAATCTGAACTTTAATGTGTTGAG
ATGGAGCGAACTAGTCGATGCAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAGTGGTCATATCATATCATATCATATCATAATCCCACTAGC
CTAGGAGATCTTGGTCATGACTAGTGCTGATTCCACCATAAAACGCCGGC
GCACGAGCGTTCGGACATCAAGTGA
UFO04442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7707-RA | 1138 | CG7707-RA | 87..1053 | 1..969 | 4780 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17244372..17244661 | 679..969 | 1390 | 99.3 | Plus |
| 3L | 28110227 | 3L | 17243529..17243767 | 9..247 | 1195 | 100 | Plus |
| 3L | 28110227 | 3L | 17243810..17244047 | 242..479 | 1190 | 100 | Plus |
| 3L | 28110227 | 3L | 17244110..17244309 | 480..679 | 1000 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:12:34 has no hits.
UFO04442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:01 Download gff for
UFO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7707-RA | 87..1058 | 1..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:21 Download gff for
UFO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7707-RA | 87..1058 | 1..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:30 Download gff for
UFO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7707-RA | 87..1058 | 1..973 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:30 Download gff for
UFO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17243522..17243765 | 1..245 | 99 | -> | Plus |
| 3L | 17243814..17244047 | 246..479 | 100 | -> | Plus |
| 3L | 17244110..17244309 | 480..679 | 100 | -> | Plus |
| 3L | 17244373..17244668 | 680..975 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:21 Download gff for
UFO04442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17236622..17236865 | 1..245 | 99 | -> | Plus |
| arm_3L | 17236914..17237147 | 246..479 | 100 | -> | Plus |
| arm_3L | 17237210..17237409 | 480..679 | 100 | -> | Plus |
| arm_3L | 17237473..17237768 | 680..975 | 98 | -> | Plus |
