UFO04446.5prime Sequence
1120 bp (1014 high quality bases) assembled on 2009-02-25
> UFO04446.5prime
CAGTCGACATGAGCAAAGTCAGAGGACCAGCTTTGTACCGCCTGGTGCCC
TCGAAAACGCTCTTCATGCTGTGCGACGTGCAGGAGAAGTTCAAGCCGGC
CATTCCGCTGCTAAGTTCGCTCATCGAAAACACTACTAAACTGCTGGCAG
CCGGCAAGGTCTTCCAAGTGCCACTGCTGGTCACCGAGCAGTATCCCGAG
AGGCTGGGCAAGACCGTTTGTGAGTTGGACATCAAGCATGCCTGTGCCAA
TATTTCCAAGACCATGTTCTCTATGCTGGTGGAGCCGGTACGTAAGAGTA
TGACTGATATCTTCGGTGGCAAGCCCAAGACGGTGGTGCTTTTCGGTCTG
GAGACACACGTCTGTGTGGAGCAGACGGCCTTCGACCTGGTAAATGATGA
AATCGATGTCTGGCTGGTGGCCGACTGCTGTGCGTCGCGTCACAATCAGG
ATCGGGACTTGGCCTTGGAGCGCCTGCGTCACATTGGCTGCAACATAGCA
ACTTCCGAGAGTGTGATATTTAATCTGCTGGGGGACAAGAACAACAAGTC
CTTCAAGGAGATTACTCCTCTGGTGAAGAAGATCTCCGCAGACATGCAGC
TATGCCGCGTCTCAAAAAATGCAAGCTTTCTAGACCATTCGTTTGGCGCG
CGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCA
CAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAA
TAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGT
TCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATAT
CAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTA
AGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAAT
CGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAAATATTTGCCCATGTG
AAACGGGGCGAAGAAGTTGTCATATTGTCACGTTTAAATCAACTGGTGAA
ACTCACCCAGGATGCTGAAACGAAAACATAATTCCATTAGCTTTAGGAAA
GGCCAGCTTACCGTACACGC
UFO04446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11333-RA | 715 | CG11333-RA | 49..661 | 8..620 | 3065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31463812..31464080 | 352..620 | 1345 | 100 | Plus |
| 3R | 32079331 | 3R | 31463541..31463751 | 143..353 | 1055 | 100 | Plus |
| 3R | 32079331 | 3R | 31463349..31463484 | 8..143 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:05 has no hits.
UFO04446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:06 Download gff for
UFO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11333-RA | 1..620 | 5..624 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:37 Download gff for
UFO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11333-RA | 1..622 | 5..626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:02 Download gff for
UFO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11333-RA | 39..666 | 1..626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:02 Download gff for
UFO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31463814..31464085 | 354..626 | 99 | == | Plus |
| 3R | 31463339..31463484 | 1..143 | 97 | -> | Plus |
| 3R | 31463542..31463751 | 144..353 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:37 Download gff for
UFO04446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27289061..27289206 | 1..143 | 97 | -> | Plus |
| arm_3R | 27289264..27289473 | 144..353 | 100 | -> | Plus |
| arm_3R | 27289536..27289807 | 354..626 | 99 | == | Plus |
