UFO04448.5prime Sequence
1118 bp (1041 high quality bases) assembled on 2009-02-25
> UFO04448.5prime
CAGTCGACATGGACGACACCGACTTCTCGCTCTTCGGGCAGAAGAACAAG
CACAAGAAGGACAAGGCGGATGCCACCAAGATCGCCCATACGCCCACATC
GGAGCTGGACCTCAAAAGGATCATAATCTCGCGCCCCACCAACGAGGACA
CATACGAGAATTGCGCGCGAGCGGGCATTGCGCTAATCCTGAACCACAAG
GATGTCAAGGGACAGAAGCAGCGCGTGGGCACCGAACGGGATCGCGATGA
CATGGAGGCGACGCTGCAGGGATTCGGATTCGATGTACGCACCTTCGACG
ATCTGACCTTCTCCGAGATCAACGACACGCTCAAAGAGGTTGCTCGCGAG
GATCACAGTCAAAACGACTGCTTTGTGTTGGCGGTGATGTCACACGGCAC
CGAAGGCAAGGTCTACGCTAAGGACATGTCATATCCTGTGGAGCGCCTTT
GGAATCCCTTCCTCGGCGACAACTGCAAGACGCTCAAGAACAAACCCAAA
CTCTTCTTCATCCAGGCCTGTCGCGGAGCCAACCTGGAAAAGGCAGTCGA
GTTCTCCAGCTTCGCTGTGATGACCAGGGAACTGGTCCCGGAGCCCGCTG
CCGCCGTTCAGCCCATCACCTATGCCATTCCCAGCACGGCGGACATCCTC
GTCTTCTACTCCACATTCGACAAATTCTTCTCATTCCGTAACGTTGACGA
TGGCTCCTGGTTCATCCAGAGCTTGTGCCGCGTCCTCGACCAGGCCGCCG
CCAACGAAGCTGCCACGCCGGAGGGCGTCGAGCTACTCCGCCTGCTGACC
GCAGTGAATCGGAATGTGGCCTACGAGTACCAGTCGAATACGAAGAACGA
GGCCCTCAACCAGATGAGGAATGCCCAACTTTATGTCGACACTGACCAAA
CATTCCAGCTGCGTGTTAAGCCCAAGACCGCAAGCTTTCTAGACCATTCG
TTTGGCGCGCGGGCCCAGGTAAGTGGTCATATCATATCATATCATAATCA
TAATCACCAACTAGCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCT
CACAATAAAACGCCCGGCGCACCGGAGCGTTCCGACCAATCCCGATGGAG
TCTTGAGGTCTATTACTG
UFO04448.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Decay-RA | 1111 | CG14902-RA | 48..971 | 9..929 | 4500 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16499763..16500096 | 672..339 | 1655 | 99.7 | Minus |
| 3R | 32079331 | 3R | 16500673..16501003 | 339..9 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 16499198..16499457 | 929..673 | 1140 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:02 has no hits.
UFO04448.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:53:05 Download gff for
UFO04448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| decay-RA | 661..1599 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:34 Download gff for
UFO04448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| decay-RA | 39..977 | 1..936 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:59 Download gff for
UFO04448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Decay-RA | 39..977 | 1..936 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:59 Download gff for
UFO04448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16499198..16499457 | 673..929 | 98 | <- | Minus |
| 3R | 16499763..16500095 | 340..672 | 99 | <- | Minus |
| 3R | 16500673..16501012 | 1..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:34 Download gff for
UFO04448.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12324920..12325179 | 673..929 | 98 | <- | Minus |
| arm_3R | 12325485..12325817 | 340..672 | 99 | <- | Minus |
| arm_3R | 12326395..12326734 | 1..339 | 99 | | Minus |
