UFO04449.5prime Sequence
1118 bp (1036 high quality bases) assembled on 2009-02-25
> UFO04449.5prime
CAGTCGACATGGCGACATCTCCCAGAAGGAAAAACGATCAAGGCGGAGTA
ATTGGCGCTAGCTCATCGCAGGACCTCGTCACTGACCAGAACTCGGGTCG
TCGTCAGGAGCAGAAGGTCTACACCTTCAGTGACCGGCCACCACAACCAA
AGCCACCGGCACCATCCGGAGTCGTTCCGGTAAAGGCCGACGACAAGTCG
AAGCCGCAGAAAACCATTCTTGAGGAGCATGGCATCATACTCGGTAAGGT
TATTGGCACCGGAAACTATGCCAAGGTGAAGATTGGCTTCTCCGAGGAGT
ACGGAAAGCGGGTGGCTGTCAAGATCATATCCAAAGTGAAGGCTCCCTCC
GAGTACACGCAAAAGTTCCTGCCGCGAGAGATCGAGGCGGTGAAGGGTCT
GCACCACGAAAATCTGATAACTTTTTATCAGAGCATCGAGACCAGTCATA
GGGTGTACTTGATAATGCAGCTGGCCGAGAATGGAACGCTTCTGGACTAC
GTCCGTGAGCGAAAGTTTCTGGACGAGCCGCAATCACGTACGCTATTCAA
GCAGCTGGTGAGTGCCGTGGAGTACATCCACAGCAAGGGAGTGGTGCATC
GGGATATTAAGTGCGAGAATCTGCTGCTGGATGAGAACTGGAATCTGAAA
CTGATCGACTTCGGGTTCGCAAGGAAGGATACCCGAACCTCCGACAATCA
AGTGATACTCTCGAAAACCTTCTGCGGCAGCTATGCCTACGCCAGTCCAG
AGATCCTCAAGGGCGTCGCCTATGATCCTTTCATGTCGGACATCTGGGCC
TGCGGCGTCGTCTGCTATGCGATGGTCTTTGGACGCCTTCCCTACGATGG
CTCCAATGTGCACATCCTGCTCAAGCGCATCAATCAATCGCTGGTCTTCC
CCAAATCCCCATCAGCTTCAGCGAGTGCAGCACATGATTATGCATATTCT
AGCACCGGTGAAGATCAGTACATATTCCGCAGTCAAGGAGGACCTTGGTA
TTCGCCTAGCAAAGCAAGCTTCTAACCCATTCGTTTGGGCCGCGGGCCAG
GTTATTGTCATAATCCTAGTCTATCTATCATAATTCAACTAGCTAGGAGA
TTCTGGTCATGACTATGC
UFO04449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9222-RA | 1290 | CG9222-RA | 165..1175 | 9..1013 | 4815 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6131284..6131689 | 47..452 | 2000 | 99.5 | Plus |
| 2L | 23513712 | 2L | 6131746..6132059 | 450..763 | 1525 | 99 | Plus |
| 2L | 23513712 | 2L | 6132112..6132369 | 762..1013 | 990 | 97.7 | Plus |
| 2L | 23513712 | 2L | 6131187..6131226 | 9..48 | 185 | 97.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:53 has no hits.
UFO04449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:57 Download gff for
UFO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9222-RA | 165..1180 | 9..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:28 Download gff for
UFO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9222-RA | 165..1180 | 9..1021 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:53 Download gff for
UFO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9222-RA | 165..1180 | 9..1021 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:53 Download gff for
UFO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6131187..6131226 | 9..48 | 97 | -> | Plus |
| 2L | 6131286..6131688 | 49..451 | 99 | -> | Plus |
| 2L | 6131748..6132058 | 452..762 | 99 | -> | Plus |
| 2L | 6132113..6132369 | 763..1013 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:28 Download gff for
UFO04449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6131187..6131226 | 9..48 | 97 | -> | Plus |
| arm_2L | 6131286..6131688 | 49..451 | 99 | -> | Plus |
| arm_2L | 6131748..6132058 | 452..762 | 99 | -> | Plus |
| arm_2L | 6132113..6132369 | 763..1013 | 97 | == | Plus |
