UFO04450.5prime Sequence
1134 bp (984 high quality bases) assembled on 2009-02-25
> UFO04450.5prime
CAGTCGACATGGCGCTTCGTCTTACGACCATTGCTCTTCTACACCGTGCT
CCTTTATTAGTTGTGCCAAAGTTAAAAGCAACACCGCCAACACGCACTCT
ATTGTTAAGAAAGAATCTGGTACCGTTTTTAGATGATGATCCTTGTGTGT
TCTCAAAGAAAGCCGTCATGCATCATTGGGGGGTCCTTCCGATTCTGTTC
ATAACACTTGTTGGAGGTATACTTAAGGTTGGCGCCATGATCCGCCTGGC
ATTGGTGAAGGACGATGTGTTCTTTACCAAGGATTCGGCATACTATATGT
ACTTGGAGACGCGCAAAGGTCCCTGGTACAAGCAAAAGAGTCGTAAGTGG
GGTGGTCGGGATGAGTATGATATGCCACCGGGATTGCTCCTGGCCAACCA
GGGCGATGTTTCTGGTCCTTCATTCGCAAGCTTTCTAGACCATTCGTTTG
GCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCAT
AATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTC
ACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGAT
GGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATT
CATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACC
TGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCC
CATGGTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAAT
CAAAACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTC
TCAATAAACCCTTTAGGAAATAGGCCAGGTTTTCACCGTAACACGCCACA
TCTGCGATATATGTGTAGAACTGCCGGAAATCGTCGTGTATTCACTCCAG
AGCGATGAAACGTTTCAGTTTGCCTCATGAAAACGGTGTAACAGGTGACA
CTATTCCATTATACCCAGCCTCACCCTCCTTTCATTGCCATACGAATTCC
GGGTGAACATCATCAGCGGGCAGAATGGAATAAG
UFO04450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ymp-RA | 1270 | CG12250-RA | 97..513 | 9..425 | 2040 | 99.3 | Plus |
| ymp-RC | 1247 | CG12250-RC | 97..512 | 9..424 | 2035 | 99.3 | Plus |
| ymp-RD | 1066 | CG12250-RD | 97..511 | 9..423 | 2030 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25592721..25592886 | 347..182 | 815 | 99.4 | Minus |
| 3R | 32079331 | 3R | 25592583..25592661 | 423..345 | 365 | 97.5 | Minus |
| 3R | 32079331 | 3R | 25608726..25608798 | 184..112 | 365 | 100 | Minus |
| 3R | 32079331 | 3R | 25608969..25609031 | 71..9 | 315 | 100 | Minus |
| 3R | 32079331 | 3R | 25608865..25608906 | 111..70 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:07:18 has no hits.
UFO04450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:57 Download gff for
UFO04450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12250-RA | 97..513 | 9..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:31 Download gff for
UFO04450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..513 | 9..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:29 Download gff for
UFO04450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ymp-RA | 97..513 | 9..425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:29 Download gff for
UFO04450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25592583..25592658 | 348..423 | 97 | <- | Minus |
| 3R | 25592721..25592885 | 183..347 | 99 | <- | Minus |
| 3R | 25608728..25608798 | 112..182 | 100 | <- | Minus |
| 3R | 25608865..25608904 | 72..111 | 100 | <- | Minus |
| 3R | 25608969..25609031 | 9..71 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:31 Download gff for
UFO04450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21418305..21418380 | 348..423 | 97 | <- | Minus |
| arm_3R | 21418443..21418607 | 183..347 | 99 | <- | Minus |
| arm_3R | 21434450..21434520 | 112..182 | 100 | <- | Minus |
| arm_3R | 21434587..21434626 | 72..111 | 100 | <- | Minus |
| arm_3R | 21434691..21434753 | 9..71 | 100 | | Minus |
