UFO04451.5prime Sequence
1143 bp (1035 high quality bases) assembled on 2009-02-25
> UFO04451.5prime
CAGTCGACATGGTGATTGGTAGTTTTCCAGTTGGAAAAATTTTCATTCAT
GGCGTGAAACGGATTAGCAAGCCATTCGGAGACCTTCTGATTTGGATGGG
CAAGCATCATCCCTTTATACGGCGCTACATCATTATTCCGCCTGCCCAGC
TCTACAACACCTTTGAGGTCCGTTCCAAGCTTCGTATGCTTCGATTAAAG
CAGCCCAGGCGGATTCCACCCCTCTCCACTCCGGTCGCCACCAGATTGGG
CGCTGATATGCTGAGTGAGGCTTTTGTGTTTGGCATCGGCGCGGGTCTCA
TATACTATGAGCTTTCAAAGTGTGAACTATTACAAATGTCTGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTT
CTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAG
GAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCG
CAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACA
AACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTT
GCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAGAAGTTGTCCATA
TTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCAGGGATTGGCTGA
GACGAAAAACATATTCTCAATAAACCCTTTAGGGAAATAGGCCAGGTTTT
CACCGTAACACGCCACATCTTGCGAATATATGTGTAGAAACTGCCGGAAA
TCGTCGTGGTATTCACTCCAGAGCGATGAAAACGTTTCAGTTTGCTCATG
GAAAACGGTGTAACAGGTGAACACTATCCCATATCACCAGCTCACGTCTT
TCATTGCCATACGAAATTCCGGATGACATTCATCAGGCGGCAGAATGTGA
ATAAAGGCGATAAAACTTGGTGCTTATTTTCTTACGTCTTAAAAGCGTAA
TATCCAGCTGAACGATTGTTAGTTAATGAGACACTGACTGATG
UFO04451.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43999-RB | 1159 | CR43999-RB | 581..913 | 9..341 | 1650 | 99.7 | Plus |
| CG43999-RC | 1098 | CR43999-RC | 581..891 | 9..319 | 1540 | 99.7 | Plus |
| CG43998-RD | 597 | CG43998-RD | 80..390 | 9..319 | 1540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23927974..23928306 | 341..9 | 1650 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-28 21:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| transib1 | 2167 | transib1 TRANSIB1 2167bp | 232..290 | 910..968 | 132 | 73.3 | Plus |
UFO04451.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:55 Download gff for
UFO04451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13602-RA | 575..916 | 1..345 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:53 Download gff for
UFO04451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43999-RB | 575..916 | 1..345 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:17 Download gff for
UFO04451.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43999-RB | 575..916 | 1..345 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 21:40:17 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:52:53 has no hits.
