UFO04452.5prime Sequence
1151 bp (1035 high quality bases) assembled on 2009-02-25
> UFO04452.5prime
CAGTCGACATGTACACAATCAACAAGGGACCTAGCAAAATTGTTGCTAAA
ACGCGTCGCGGCCTGGCACCAAATTTTGAAAAATTCGAAAGCATCAAGGA
GAGCGGCCGCAAGAACGCTAGTTTCGATCTGAACAGTCCCGAGGAGCACA
AAAACATACCGCGTCCGGTGTTTCAACAGAGCTTCGCCACCAAGCGGATA
ACGCCAACCAAACTGATCGAGGATGAGGTGATAACGCCGCAACATGAGGA
AATAATACGTTACATAAATGACTCCTGGAACATGCTGGTGGCGCAGAATC
CCTACGACTCGAGCTCATCCGCCAAGCCTGTTGAGAAACCTGTAGCGGAT
GCCAACAACAACAGCGCCGCCAGTCCAGTGGAAAGCATAATGGCCAACAG
CCCAGTGCCCGCTGCCTCAACAGCCACTGTCTGGGTGGAACCACCGAGTC
CAGCGCTACAGGACTTCAAGCCCTTCGACCTGGAGTCGTGGTGGGGACGT
CGCCTCTTCCAGAACATAACCAAAAGCCTGGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATA
ATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGA
TTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATC
CAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCG
AGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTG
TAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGAT
GAACCTGAATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATATATT
TGCCCATGGTGAAACGGGGCGAGAAGTTGTCCATATTGCCACGTTTAATC
AAACTGGTGAACTCACCCAGGATGGCTGAGACGAAAACATATTCTCAATA
AACCCTTTAGGAAATAGGCAGGTTTCACGTACACGCCACATCTGCGAATA
TTATGTGGTAGAACTGCGAATCGTTCTTGTTTTCCCTCCGAGGCGGATGA
AACGTTTCAGTTGCTCTATGAACGGGTTAACAGGTGAACCATCATTATAC
C
UFO04452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7841-RB | 1628 | CG7841-RB | 402..924 | 8..530 | 2585 | 99.6 | Plus |
| CG7841-RA | 1377 | CG7841-RA | 402..924 | 8..530 | 2585 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15505892..15506148 | 530..274 | 1255 | 99.2 | Minus |
| 3L | 28110227 | 3L | 15506227..15506345 | 273..155 | 595 | 100 | Minus |
| 3L | 28110227 | 3L | 15507473..15507567 | 154..60 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 15507798..15507851 | 61..8 | 270 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:03:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 6335..6393 | 349..408 | 117 | 68.3 | Plus |
UFO04452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:55 Download gff for
UFO04452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7841-RA | 432..960 | 1..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:10 Download gff for
UFO04452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7841-RA | 396..924 | 1..530 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:57 Download gff for
UFO04452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7841-RA | 396..924 | 1..530 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:57 Download gff for
UFO04452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15505892..15506148 | 274..530 | 99 | <- | Minus |
| 3L | 15506227..15506345 | 155..273 | 100 | <- | Minus |
| 3L | 15507473..15507566 | 61..154 | 100 | <- | Minus |
| 3L | 15507799..15507854 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:10 Download gff for
UFO04452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15498992..15499248 | 274..530 | 99 | <- | Minus |
| arm_3L | 15499327..15499445 | 155..273 | 100 | <- | Minus |
| arm_3L | 15500573..15500666 | 61..154 | 100 | <- | Minus |
| arm_3L | 15500899..15500954 | 1..60 | 93 | | Minus |
