UFO04453.5prime Sequence
1130 bp (1023 high quality bases) assembled on 2009-02-25
> UFO04453.5prime
CAGTCGACATGTATGGTCCTGGGGTGAAAGTGGGTAACTGGCTGGAAACT
GCCTTGTCGGAGGAGATGCGTATGAGTGAAATGAAGAAGCGTCGGGAGAG
CGGTAACCTGCTGCTGGACAGGACCCGTGCCGTCTACGACCGCTTCTACC
AGGGAACAGTGCTGGGTCCGCCGCAGGATGTTCTGGCCTTCGGCGTGGTG
GTCCAGATCCGGCCCGTGAAGATCGGTGTCTGCCGCCAACAGGTTTCGGA
TCAGAACCTGGTGCTTTCGGTGGTAATTACTCAGGAGGGACTGCATCGCA
ACTGCAAGACCATCAACGAGATGTGTGATCTTACGGTGGCACCTTCGCCG
CGTCCCGCGTTGCGCAACAGCTTCAGAATCGTCAGTCCGAACGAGGATGA
CCGTACCGGTCAGTATCTGGCCTACGGCGAGAAGTTCCGCCTGCAAGCCC
TGGAGCCTGCTGATGAGCCTATGTATGTTTTCAGCGGTCCCAAGAGGCTG
AACCTCTCGCTTCCCGTGGAGAAGGCGTTCTTTACAACCAAAAACGGCGA
GGTTACACTTCCACTCGGCTTAGTGTCCCATAAGAATTGTGGCCCCTCTG
CCCGTGTGCCCACTTCGCACACTCACTTCTTCTGCGCCCACAAGGATCCC
GATCTTCGATTCGAAAGCGAAGGCAAGACCATACCAGTACACAATCCGCT
TGTCATTGTTCACGCGGTTACCAATCGAAATTTGGCTGTGGAGAATGTTT
TGGCCAACACCTTGTTTGGCCCCGAGTTCCAGGTGTCCGTGCAGACGTAC
AAGAATGTGTACAAGCGCGAGACATGGAAGACCCTGTGGAAGTTCACATA
TGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTC
ATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAGATCCT
GGTCATGACTAGTGCTTGATTCTCACCATAAAAAACGCCCGGCGCAACGA
GCGTTCTGACCAATCCAGATGGGAGTTCTGAGGTCATTACTTGGATCTAT
CACGGAGTCCAGCGAGCTCGATATTCAAATTAGGCCCGGCCCTGCCATCA
TGCAGTACTGTTTGTAATATCTTAGACTTC
UFO04453.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15498-RA | 1139 | CG15498-RA | 122..964 | 9..851 | 4185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21568332..21568852 | 584..64 | 2605 | 100 | Minus |
| 3R | 32079331 | 3R | 21567694..21567858 | 851..687 | 810 | 99.4 | Minus |
| 3R | 32079331 | 3R | 21568169..21568275 | 689..583 | 520 | 99.1 | Minus |
| 3R | 32079331 | 3R | 21568972..21569028 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:27 has no hits.
UFO04453.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:53 Download gff for
UFO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15498-RA | 115..964 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:15 Download gff for
UFO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15498-RA | 115..964 | 1..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:26 Download gff for
UFO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15498-RA | 115..964 | 1..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:26 Download gff for
UFO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21567694..21567858 | 687..851 | 99 | <- | Minus |
| 3R | 21568172..21568273 | 585..686 | 99 | <- | Minus |
| 3R | 21568332..21568850 | 66..584 | 100 | <- | Minus |
| 3R | 21568972..21569032 | 1..65 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:15 Download gff for
UFO04453.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17393416..17393580 | 687..851 | 99 | <- | Minus |
| arm_3R | 17393894..17393995 | 585..686 | 99 | <- | Minus |
| arm_3R | 17394054..17394572 | 66..584 | 100 | <- | Minus |
| arm_3R | 17394694..17394754 | 1..65 | 93 | | Minus |
