UFO04455.5prime Sequence
1140 bp (1028 high quality bases) assembled on 2009-02-25
> UFO04455.5prime
CAGTCGACATGGTACTACAAAACCACAACACTGTGGTGGCCCGTTCCACC
TTGACGCCGAACAGCAGCAGCCAGAACTTTGGCTCCCAACATCCAGCTGG
AACGCCCAATGGATCCGGAACCGGACGTAGTCCCCTGAACGCCGGACCCA
GCACCCAACGTCCCATTATCGACCTGTTGGTGGCCATGGTGGCCGTGCCG
GTGCTTATCCTCTGCGCCCTGCAGCTGGAGAAGAATCTGCGGGACAATAG
CGTGGAGTCTCGCTGGTTGGTTTTCGCCCTGGGCATCGGGATGCTGGTGA
TCAGCGTGATCATCTGCGGTTATGTCACGCACCGCATGGGCGTCTGCATT
TGGGCGGGACCCATCGACGAGGCGGGAAACAGGGCCACCAATGGAGCCAT
GCCACATATCAACTCCCAGAACGATGTGCTGCGCATTGTCGACTCACTGC
CGCCAAGTTACGAAAGCGTGGTCAAGTTCGAGCTACCGCCGCCGACCTAC
GAATGCCTGGTCATCAGCTGGGGTCGGTCGAAGGATCTGGAGCCGGCACA
GACCTCAGCCAAGCGAGGAGCTGGTGGATCCAACTCCCCGCCCGGGTCCA
CCCTGCACATCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAG
GTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCC
TAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACG
CCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTC
ATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACG
CCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTG
CCGACATGGAAGCCATCACAAACGCATGATGAACCTGAATCGCCAGCGCA
TCAGCACTTGTCGCTTGCGTATAATATTTGCCCATGGTGAAACGGGGGCG
AAGAGTGTCCATATTGCCACGTTTAAATCAACTGTGAACTCACCCAGGAT
TGGCTGAAACGAAAAACTTCTCAAAACCTTAGAATAGCCAGTTACGTAAC
CGCCCAATCTGCAATTTGTCACTGCGAATGCTCTGCTATA
UFO04455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13004-RB | 2234 | CG13004-RB | 906..1513 | 4..611 | 3010 | 99.7 | Plus |
| CG13004-RD | 2321 | CG13004-RD | 998..1600 | 9..611 | 3000 | 99.8 | Plus |
| CG13004-RC | 936 | CG13004-RC | 49..651 | 9..611 | 3000 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16827676..16828074 | 407..9 | 1980 | 99.7 | Minus |
| X | 23542271 | X | 16827402..16827605 | 611..408 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:16 has no hits.
UFO04455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:51 Download gff for
UFO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RB | 895..1507 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:25 Download gff for
UFO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RB | 895..1507 | 1..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:43 Download gff for
UFO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13004-RB | 901..1513 | 1..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:43 Download gff for
UFO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16827402..16827605 | 408..611 | 100 | <- | Minus |
| X | 16827676..16828078 | 1..407 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:25 Download gff for
UFO04455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16721435..16721638 | 408..611 | 100 | <- | Minus |
| arm_X | 16721709..16722111 | 1..407 | 98 | | Minus |
