UFO04457.5prime Sequence
1143 bp (1019 high quality bases) assembled on 2009-02-25
> UFO04457.5prime
CAGTCGACATGTCCGGAAAGGGGGAGATCATCCAGATCCACATTGGCCAG
GCCGGTGTGCAGATAGCCAACGCCTGTTGGGAGCTCTTCTGTCTGGAGCA
CGGCATTTTGGCCAATGGAAGACTAACCCAGTCGCCCATGGACGACTCGT
TCCTCACGTTCTTTGAGTTCACCAGCCATCAGCCGTGTGTGCAACCTCGA
CTCGTCATGATCGACACGGAGCCCACAGTGATAGATGAAATCCGTACCGG
CTCCTACCGCAACCTCTTTCATCCGGATACTTTGATTACGGGCAAGGATG
ACAGTGGCAGTAACTTCGCCAGGGGCTATAATCTGATGGCCAGCGAGCTG
TTGGATCGCTCCATGAACGCCATTCGTCGCGTGGCGGATCGTTGCAGAAA
TCTCAGGGGTTTCCTGGTCTTTCGAGCAATCGGCGGAGGTTCTGGTTCCG
GGCTAGGGACTCGCATCATGGAGAGACTGGTCGAAGACTTTGGCAAGAAG
ATGACTGTTGTGGAGTTCCTCGTTTATCCTTCGCCTTCAATCTCTCCGGT
TATTGTGGAACCCTACAACGCACTGCTGGCTGCCCATTTCTCCATGGACT
GCGCCGATGTATCGTTTATTGTGGACAATGAAGCTCTATACGACATATGT
GCTAATACACTCAATGTCCCTGCTCCCACATATACGAATCTCAATAGGAT
CATCGCACAAGTGGTTTCCAGCTTTACGGCCTCACAGCGTTTTGGTGGCG
GATCGACCGTGAGTTTTCAGAGCTGCAGACGAACCTGGTGCCATATCCCC
GAATCCACTATCCGCTGATCAACTACGCACCACTGGTACCCATTTCGCAC
TCGCAGTTCGTCAATATGTCGACGGCCCAGCTAACGGGTCAGTGTTTCCA
GATGAGCAACCAAATGGTCAGATGCAATCCCTCGCATGGCAAGTACATGG
CCAGTGTGCTGCTCTACCGCGGGTGATAATCGCACCCAATGGAGATCAAT
ACGGCGCTGGAAGAACATCAAGGCGGAACAGGTCTTTCGGTTTGTCGACT
GGTCCGCCCACGGGCCTTTAAGAATCGGCGTAGCCCAATGGCGGGCGGTA
CTATTGTTTCCTGGGGGGCGAATCTGGGACACCAATCCGGCCT
UFO04457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7794-RA | 1549 | CG7794-RA | 101..1179 | 7..1090 | 5085 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18024462..18024984 | 539..1065 | 2215 | 98.1 | Plus |
| 3R | 32079331 | 3R | 18024091..18024396 | 233..538 | 1500 | 99.3 | Plus |
| 3R | 32079331 | 3R | 18023807..18024034 | 7..234 | 1140 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:28 has no hits.
UFO04457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:48 Download gff for
UFO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1191 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:41 Download gff for
UFO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1191 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:27 Download gff for
UFO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7794-RA | 95..1191 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:27 Download gff for
UFO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18023801..18024034 | 1..234 | 98 | -> | Plus |
| 3R | 18024093..18024396 | 235..538 | 99 | -> | Plus |
| 3R | 18024462..18025020 | 539..1104 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:41 Download gff for
UFO04457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13849523..13849756 | 1..234 | 98 | -> | Plus |
| arm_3R | 13849815..13850118 | 235..538 | 99 | -> | Plus |
| arm_3R | 13850184..13850742 | 539..1104 | 96 | | Plus |
