UFO04461.5prime Sequence
614 bp (445 high quality bases) assembled on 2009-02-25
> UFO04461.5prime
CAGTCGACATGGGTATTACGGAGACAGCAGCGACAACAACTACCGGACTG
GGAGCGGCAAACGCCGTGGAGAGCAAACAAATCCTCTCGCTCGAGGTGTT
CCAGGACATCTTCAAGCACGTGGAACCGGATGTGCAGATCGATGCCTTCG
AGCTGGCCCAGGGCTCCGACCGGGGTGACAACTATACGGCCGCCCTGTAT
CGCATAAAGCTAACCGGAAAGCGAAGGAGTCTCAAATGGGAACAGAACGT
CATTTGCAAGGTGATGCCAGAAAGTGTAGTCGCGCGGGAGGCCTACAAGA
GCGACAAGCTCTTCCGCAACGAGGTGCAGTTCTACAACACCATCATGCCG
GAAACTGCTCAAGTTTCCAGGGCGAGCAAAAACGAACCCAGGACACACCC
CGTGTTTAATGCCCTTTCCCAAGTGCTTATTCAGCCAGGCAATGATTCGG
CTTCTTATTGGAGGATTCTTCCCGAACGTGGGTTTTTCAAATGCCCGACC
CCCCCCAAGGGGCCTAGTTCGGGAAGAAAAAGAATTTGTTTTGGGGGGGG
GGGGGCCCAACTTGCCCGGCCCTTTTTTTTCCCCAAAATTTTCAAAAAAC
CCCGGGGGGAAAAA
UFO04461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14314-RA | 1606 | CG14314-RA | 156..643 | 9..510 | 1915 | 93.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18216525..18216690 | 151..316 | 785 | 98.2 | Plus |
| 3R | 32079331 | 3R | 18216297..18216440 | 9..152 | 690 | 98.6 | Plus |
| 3R | 32079331 | 3R | 18216750..18216867 | 316..441 | 205 | 90.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:03:36 has no hits.
UFO04461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:46 Download gff for
UFO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 164..644 | 9..503 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:38 Download gff for
UFO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..636 | 9..503 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:04 Download gff for
UFO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14314-RA | 156..636 | 9..503 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:04 Download gff for
UFO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18216297..18216440 | 9..152 | 98 | -> | Plus |
| 3R | 18216527..18216690 | 153..316 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:38 Download gff for
UFO04461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14042019..14042162 | 9..152 | 98 | -> | Plus |
| arm_3R | 14042249..14042412 | 153..316 | 98 | -> | Plus |
