UFO04462.5prime Sequence
1137 bp (1024 high quality bases) assembled on 2009-02-25
> UFO04462.5prime
CAGTCGACATGGCGAAGAGAAACGTAGCGCCCATTCCCAAAACCCACGAG
CGCCCTCCAGGTCCCAGGGGTCAGGATACCAAGGGCAACAATGAGCTCTT
CCTGAAGGAGGTCTTCAATACCACCAATAAATATCGGGCAATGCACGGCT
GTCCCGCGGTGACCATTAATGCTGCACTAAATAAGCTGGCTCAGGAATGG
GCCAATCATCTCCGCGATCAGAACACAATGGCGCACAGACCCAATCCCAA
GTATGGCGAAAACATTTTCCTCTCCGGTGGAATGGATGTGACCGGTGATC
TGCCGGTGGAAATGTGGTATCGGGAAATCAATAGCTACGATTTCAACAAG
GCGCAGTTTGTGCCCACCGCTGGACACTTTACTCAGCTCATTTGGAAGTC
GTCGGTGGAAATGGGTTCGGGTGTGGCCCGAAAAGCGGATAGAACTTGGG
TGGTTTGCAACTACAATCCTCCCGGCAATGTTGTGGGTTTGTTCAAGGAT
AATGTGCCGCCAAAGCAAGCAAGCTTTCTAGACCATTCGTTTGGCGCGCG
GGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACA
ACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATA
AAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTC
TGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCA
AATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAG
CATTCTGCCGACATGGAAAGCCATCACAAACGGCATGATGAACCTGAATC
GCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATGGT
GAAACGGGGCGAAGAGTTGTCCATATTGGCCACGTTTAAATCAAACTGGT
GAACTCACCAGGGATGCTGAGACGAAAACATATTCTCAATAACCCTTTAG
GAAATAGCAGTTTTCACCGTAACACGCCCATCTGCGAATATATGTGTAGA
AACTGCGAAATCGTCTGCATTCACTCGAGCGATGAAACGTTTCAGTGCTC
ATGAACCGGTACAAGGTGAACATCCATACAGTCACGC
UFO04462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4270-RA | 686 | CG4270-RA | 117..626 | 9..518 | 2520 | 99.6 | Plus |
| CG4270-RB | 584 | CG4270-RB | 117..541 | 9..433 | 2095 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:02:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2263816..2264042 | 207..433 | 1120 | 99.6 | Plus |
| 2L | 23513712 | 2L | 2263558..2263755 | 9..206 | 975 | 99.5 | Plus |
| 2L | 23513712 | 2L | 2264097..2264181 | 434..518 | 425 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS | 5142 | BS BS 5142bp | 2465..2510 | 922..877 | 113 | 71.7 | Minus |
UFO04462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:45 Download gff for
UFO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4270-RA | 89..609 | 2..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:06 Download gff for
UFO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4270-RA | 111..631 | 2..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:46 Download gff for
UFO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4270-RA | 111..631 | 2..525 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:46 Download gff for
UFO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2263552..2263755 | 2..206 | 97 | -> | Plus |
| 2L | 2263816..2264042 | 207..433 | 99 | -> | Plus |
| 2L | 2264097..2264181 | 434..518 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:06 Download gff for
UFO04462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2263552..2263755 | 2..206 | 97 | -> | Plus |
| arm_2L | 2263816..2264042 | 207..433 | 99 | -> | Plus |
| arm_2L | 2264097..2264181 | 434..518 | 100 | == | Plus |
