UFO04464.5prime Sequence
1149 bp (1056 high quality bases) assembled on 2009-02-25
> UFO04464.5prime
CAGTCGACATGGCCGTCTTAACTACTCACGAAATAGATTGCATTATAAAG
GAGCTCACATCCCTGAATGGAAGTGAGTGCACATTAAAGGAGGAACTAAT
CGAGAGACTCATTCAACAGACTCGTGAAGTGATCAAATGGCAACCGATGC
TGCTCGAACTTCAGGCTCCGGTCAATATATGCGGCGATATTCATGGCCAG
TTTACAGATCTCTTGAGGATTTTCAAGGCATGCGGCTTTCCACCCAAAGC
CAACTATTTATTTCTCGGTGACTATGTGGACCGGGGCAAGCAATCGCTGG
AAACAATTTGCCTGCTATTTGCTTACAAAGTTAAATATCCGCTAAATTTC
TTTTTGCTTCGCGGCAATCACGAGAGCGCCAGTATAAATAAAATTTACGG
ATTTTATGACGAGATCAAACGTAGACACACTGTTCGTCTGTGGCACAGTT
TCACCGATTGCTTCAACTGGCTTCCGGTGGCCGCATTGGTGGGCGAGCGC
ATCTTCTGCTGCCACGGAGGACTGAGTCCATCGCTCCGGAATTTGCAACA
GATCAATCATATTCAGCGACCCACTGATATTCCGGATGAGGGTATTATGT
GCGATCTCCTTTGGGCGGATCTAAATCACACCACCAAAGGCTGGGGTCAC
AACGATCGCGGTGTGAGCTTCACCTTCGATAAGGTCATAGTTCGGGATTT
TCTTAAAGCCTTCGACTTGCAACTTATGGTTCGCGCCCATGAGGTTGTGG
AGGATGGATACGAGTTCTTTGCCAACCGACAGCTGGTCACCGTATTCTCG
GCCCCCAACTATTGCGGTATGATGAACAATGCCGGCGGAGTGATGAGTGT
TAGCACAGACTTGATCTGCTCCTTCGTCATTATTCTACCGTGTCACAATA
CAAATGATTGCGACTGATGCCAACCAAATGCCGACTAACGAAGAGGAGGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAGTGGTCATAA
TCATAATCATAATCATAATCATAATCACACTAGCCTAAGGAGATCCTGGT
CATGACTATGCTTGGATTCTCACCAATAAAAACCCGCGCACGACGTCTGA
ACAAATTCGGATTGGAATTGAGTCATTATCTGATCTATCACAAGATTCC
UFO04464.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PpY-55A-RB | 1082 | CG10930-RB | 83..1024 | 9..948 | 4645 | 99.7 | Plus |
| PpY-55A-RA | 1175 | CG10930-RA | 83..1024 | 9..948 | 4645 | 99.7 | Plus |
| flw-RC | 3883 | CG2096-RC | 703..1082 | 150..529 | 415 | 74.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17955547..17956488 | 948..9 | 4595 | 99.7 | Minus |
| X | 23542271 | X | 15359811..15360177 | 529..163 | 395 | 73.8 | Minus |
| 3R | 32079331 | 3R | 12425162..12425551 | 529..140 | 315 | 72.1 | Minus |
| X | 23542271 | X | 10406451..10406701 | 150..400 | 295 | 74.5 | Plus |
| 2R | 25286936 | 2R | 22041989..22042073 | 816..732 | 215 | 83.5 | Minus |
| X | 23542271 | X | 15359522..15359609 | 818..731 | 215 | 83 | Minus |
| 2R | 25286936 | 2R | 21881589..21881664 | 817..742 | 200 | 84.2 | Minus |
| X | 23542271 | X | 10407164..10407268 | 742..846 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:57:48 has no hits.
UFO04464.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:43 Download gff for
UFO04464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpY-55A-RA | 83..1024 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:33 Download gff for
UFO04464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpY-55A-RA | 83..1024 | 9..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:31:08 Download gff for
UFO04464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PpY-55A-RA | 83..1024 | 9..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:31:08 Download gff for
UFO04464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17955547..17956488 | 9..948 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:33 Download gff for
UFO04464.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13843052..13843993 | 9..948 | 99 | | Minus |
