UFO04465.5prime Sequence
1153 bp (1017 high quality bases) assembled on 2009-02-25
> UFO04465.5prime
CAGTCGACATGTTCAACGGCTTACCAACCTTGATGAAATACCCAGACCGA
TCGCCTTTTCTGTGCGGTCCCAGCGGATTTACATTCGACAATTGTCTGCG
CAACAAACAACTAAAAGAGAATGGCCTTGAGGAGCCGAATAGCTTTACTA
CTGGCACCACTGTGGTGGGCATCGTGTTCGACGGCGGAGTAATCATAGGC
GCCGAGTCCAGGGCTACCAGCGGCGGCATAGTTTTCTCAAAGACGTGCCG
CAAAATTATTGAGCTGCAGGCCAACATTTTTGCCGCGGGAGCTGGAACCG
CTCGGGACACGAAAGCCCTGGTGGAACTGACGCGGGCGCAGCTGGAGCTT
CACCGGATGAACACTGGGTTCCGCAAAGTGCCGGTGTGCTGTGCCAACCA
GATGATACGGCAGCTGCTGTTCCGTTTCAACGGGAATATAGATGCCGACA
TGATCATAGGCGGCGCGGATAACACCGGAGCGCATCTCTTCTGCACCCGC
AGCGACGGCTCCACGGACACGGCGCCCTTCACGTCCATCGGCTCCGGCTA
CCAGGTATCCATGTCCATCCTGGAGTCACGGTGGTCGGAGGACCTCTCCG
AGGAGTCCGCCTGCGCCCTGGCTTGCGACGCCGTGGCCGCGGGCATGAAG
AACGACCTGTGCTCCGGAGGCAAGGTCAGCCTCTGCGTCGTGCGCTGCGA
CTTCTCGGTGCAATGGCCCGAGCAGCTCCCCCGCCAGGTCCCACCAACTC
GCACCTATCGCCTGTCACCCAAGCCCGGCCGAACCACCATTCTATCCACC
TTGGTGCATCCGGTGCTTTCGTGGCGGGGCGCCCTAGCTCTGCCCGAGCC
AGGAGGTAGCCAGGAGCCAGGGCGAGGACCAGCACTAGTGTGCCGCCAGA
GGGCAGGAGCCCGCGCAGATCCAACAGTCTGGACGAGCCGGAGGCCAAAA
GAAAGAAACGCGGAAGGAAGAGCAAGCTTTCAGAACCATTCGTTTGGCGC
GGCGGGCCCAGGTAGTGGTTATAATCATATTCTATCATAATCATAATCAC
ACTAGCCTAAGAAAATCTGTCATGACTAATGCTTGAATTTCTCACCATAA
AACGCCCGCGCGCCACGGACGTTCTGAACAAAATCCGAATGGAGTTCTGA
GGT
UFO04465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta2R2-RA | 1319 | CG12161-RA | 93..1056 | 9..968 | 4700 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5218014..5218705 | 968..281 | 3265 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5218771..5218951 | 280..100 | 905 | 100 | Minus |
| 3R | 32079331 | 3R | 5219345..5219436 | 100..9 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:09 has no hits.
UFO04465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:42 Download gff for
UFO04465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12161-RA | 11..976 | 9..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:21 Download gff for
UFO04465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 11..976 | 9..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:39 Download gff for
UFO04465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta2R2-RA | 93..1058 | 9..971 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:39 Download gff for
UFO04465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5218018..5218705 | 281..964 | 99 | <- | Minus |
| 3R | 5218771..5218950 | 101..280 | 100 | <- | Minus |
| 3R | 5219345..5219436 | 9..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:21 Download gff for
UFO04465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1043740..1044427 | 281..964 | 99 | <- | Minus |
| arm_3R | 1044493..1044672 | 101..280 | 100 | <- | Minus |
| arm_3R | 1045067..1045158 | 9..100 | 100 | | Minus |
