UFO04466.5prime Sequence
1139 bp (1016 high quality bases) assembled on 2009-02-25
> UFO04466.5prime
CAGTCGACATGGGCATCCTAGAGAAGATCGCGGAGATCGAGCGCGAGATT
GCGCGGACGCAGAAGAACAAAGCCACCGAATACCATCTGGGCCTGCTGAA
GGCCAAGTTGGCCAAGTATCGCTCCCAGCTGCTGGAGCCATCCAAGAAGG
GCGAAAAGGGCGACGGATTTGATGTGCTCAAGAGCGGCGACGCCCGGGTG
GCCCTCATTGGCTTTCCCTCCGTGGGGAAGTCCACAATGTTGTCCACTTT
GACCAAAACGGAATCGGAGGCGGCAAACTATGAGTTCACCACTTTGACCT
GCATTCCGGGTGTCATTGAGTATCAGGGTGCCAATATCCAGTTGCTGGAT
CTGCCCGGAATCATCGAGGGCGCTGCCCAGGGCAAGGGGCGTGGTCGTCA
GGTCATTGCCGTAGCCCGCACCGCTGATTTGGTGCTGATGATGCTGGACG
CCACCAAGCCCAACGTTCACCGGGAGCTGCTCGAGCGAGAGCTGGAGAGC
GTGGGCATTCGTCTGAACAAGCGCAAGCCCAACATCTACTTCAAGCAGAA
GAAGGGCGGCGGCCTGAGCTTCAACGCCACCTGTTCCCTTACGCGCTGCA
ACGAGAAAATGGTCCAGACCATCCTGCACTCCTTCAAGATCTTCAACGCC
GAGGTGCTCTTCCGCGAAGACTGCACCGAGGACGAGTTCATCGACGTGGT
CACCGCCAACCGTGTGTATCTGCCCTGTCTGTATGTCTACAACAAGATCG
ATCAGATCTCCATCGAGGAGGTGGACCGCTTGGCGCGCCAGCCAAACTCG
ATAGTGGTTAGTTGCAACATGAAACTTAATCTGGACTACATGATGGAGGC
GCTCTGGGAAGCTCTCCAGCTCATCAGAGTGTACACAAAGAAGCCAGGCG
CTCCTCCAGACTTTGACGATGGATTGATTCTGAGAAATGGCGTCAGTGTG
GAGCATGTGTGCCATGCCATCCATCGCCACGCTGGCGGCCGCAGTTCAAG
TATGCCCTGTGGGGGGGCACCTCCCCGAAATACCTCCCCGCAGCGCGTGG
GGGATTGCCCATGTGATGGCCGACAGGGACGTTCTCCAGGTGGTGAGAAA
AGCAGCTTTCTGACCATCGTCGCGCCGGTCCAGTAAGTG
UFO04466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6195-RA | 1250 | CG6195-RA | 118..1202 | 8..1096 | 5165 | 98.5 | Plus |
| 128up-RA | 1304 | CG8340-RA | 440..548 | 314..422 | 215 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19647214..19647878 | 937..273 | 3325 | 100 | Minus |
| 3R | 32079331 | 3R | 19647931..19648133 | 273..71 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 19646978..19647131 | 1096..939 | 455 | 91.8 | Minus |
| 3R | 32079331 | 3R | 19648229..19648293 | 72..8 | 295 | 96.9 | Minus |
| 2R | 25286936 | 2R | 12037922..12038030 | 314..422 | 215 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:23:26 has no hits.
UFO04466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:41 Download gff for
UFO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6195-RA | 204..1304 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:30:42 Download gff for
UFO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6195-RA | 204..1304 | 1..1105 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:20 Download gff for
UFO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6195-RA | 112..1212 | 1..1105 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:20 Download gff for
UFO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19646973..19647131 | 939..1100 | 91 | <- | Minus |
| 3R | 19647213..19647877 | 274..938 | 99 | <- | Minus |
| 3R | 19647931..19648131 | 73..273 | 100 | <- | Minus |
| 3R | 19648229..19648296 | 1..72 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:30:42 Download gff for
UFO04466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15472695..15472853 | 939..1100 | 91 | <- | Minus |
| arm_3R | 15472935..15473599 | 274..938 | 99 | <- | Minus |
| arm_3R | 15473653..15473853 | 73..273 | 100 | <- | Minus |
| arm_3R | 15473951..15474018 | 1..72 | 91 | | Minus |
