UFO04470.5prime Sequence
1097 bp (994 high quality bases) assembled on 2009-02-25
> UFO04470.5prime
CAGTCGACATGGACAATAATCCGACGACCCCTGCTTTGCTTGCTCAGAGC
TCCTCGGTAAACGTGTTCCACGATGAATCACTGTTACCTCAGCGTAATGT
AAAAACAAGTGAGAATGTTCCACCAACTTGTGCGGAGAAAACGTTGTTTG
TGCTGTCCATGATTCTGATAGTCCTTTGCCTGCCGTGGTCCCTATTCTGC
TGTCTCAGGGTAATGTCGGAGTACGAGCGAGCGGTAATCCTGCGCCTGGG
TCGCCTGCGCCCTAAGCCCCCGAGGGGGCCAGGCGTCATCTTTCTCGTGC
CCTGCATTGATGACCTCGCTGTTGTGGACATACGTACCAGGTCATTTGAC
CTACATAGACAGGAAATCCTCACTCGTGACATGGTGACGATCAGCATCGA
CGGAGTGGTGTACTACAGCATCAAGAGCCCATTCGACGCCATGCTGCAAG
TATACGATCCGGAGGAGGCGACCGAGAAGCTAGCAATGACCACGCTGCGT
AACGTGGCCGGCACCCACAAGCTAATGGATTTGCTCTCGTCCAAGGAGTA
CCTCTCCAACCAAATAGAGGGTATATTGTACAACTCCACAGAGCCCTGGG
GCATACGCGTGGAACGGGTCGAGATCAAGGAGATCTTCATGCCTGATCAA
CTGAAGCGCGCCCTGGCTGTGGAACAGGAGGCGATGCGTGAGGCCAAGGC
CAAGGTGGCCGCGGCGCAGGGGAGCGAGATGCGGTAACTGCTCTGAAGGA
GGCTGCCGACATAATGGAGACCAACCCCATAGCCCTGCAGCTACGGTACT
TGCAAACACTGAACTCCATCTGCAATGATGACACCCGGTCCTACGTCTTT
CCTTTTCCTGTAGACATTGTGAGGAATTTGATGACGCAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATATC
ATAATCATATCACACTAGCCTAGGAAATCCTGTCATGACTGTGCTTGATT
CTCTACCAATAAAAACGCCCGCGCAACGAACGTCTGAACAATTCCGAATG
GATTCTGAGGTCATTACTGATCTATCCACAAGAGTCAAGCGAGCTCG
UFO04470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14644-RA | 1034 | CG14644-RA | 69..945 | 9..884 | 4360 | 99.9 | Plus |
| CG14644-RB | 995 | CG14644-RB | 228..906 | 207..884 | 3370 | 99.9 | Plus |
| CG14644-RB | 995 | CG14644-RB | 69..170 | 9..110 | 510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4252298..4252814 | 625..109 | 2585 | 100 | Minus |
| 3R | 32079331 | 3R | 4251983..4252242 | 884..626 | 1250 | 99.6 | Minus |
| 3R | 32079331 | 3R | 4252874..4252975 | 110..9 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:03:47 has no hits.
UFO04470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:48 Download gff for
UFO04470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14644-RA | 66..954 | 3..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:52:49 Download gff for
UFO04470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14644-RA | 66..954 | 3..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:12 Download gff for
UFO04470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14644-RA | 66..954 | 3..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:12 Download gff for
UFO04470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4251974..4252242 | 626..893 | 98 | <- | Minus |
| 3R | 4252298..4252814 | 109..625 | 100 | <- | Minus |
| 3R | 4252876..4252978 | 3..108 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:52:49 Download gff for
UFO04470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 77696..77964 | 626..893 | 98 | <- | Minus |
| arm_3R | 78020..78536 | 109..625 | 100 | <- | Minus |
| arm_3R | 78598..78700 | 3..108 | 97 | | Minus |
