UFO04471.5prime Sequence
1118 bp (980 high quality bases) assembled on 2009-02-25
> UFO04471.5prime
CAGTCGACATGGCGGATCGAGCAAAGGATAATACCGATGAGCCTGCTGAC
TTCGAGACGGCAATCGCAGAGTGTGGCTTTGGGCTCTTCAACGTGTTCAT
CCTGTGCAGCGCGGTACCCTGCCTCACGGCGATGGTCTTCTCGGCCTCGG
CGCTGTCCTATGTGATGCCCTCCGCCGAGTGTGACCTTGACCTGAGCATC
GTGGACAAGGGAATGCTGCATGCGGTGACCTATGCGGGCATGATCATCTC
GGCGGTGCCCTGGGGATTTATAGCAGACACCATTGGACGCCGACCCGTCC
TCATTTCGGGCGGCTGGCTTGATGGCTTCTTCGTCCTGTGCGCTTCGCTC
AGCCAGAACACTGCCCAACTGATGGCCTTCAAGTTCTTCGATGGTTTAAT
CATCTGCGGTCCATTTGCGGTCGTGGTCAGCTACCTGGCCGAGTTCCATG
GCAAAAAGCATCGGCCTTACATCATGCTGTTCGTGGGTCTGTGTGTTTCC
ATTGGATCGATGATTTTGCCCCTGCTCTCCTATTTGCTGCTACCGGTGCC
CATCCTTTTCACGGTCTCCTCGATGAAGTTTCGCACCTGGCAGGTCTTCC
TGGCGGTCAGCTCGGCGCCCAGTCTGCTCAGCGGTTTTCTGCACATCTTC
CTGCCCGAGAGCCCCAAGTTCCTTATGTCTCAGGGAAATTATAAAAAGGC
TTTGGACTCCTTGCAGCGCATCTACAAGCTGACAAGCGGAAGAGCAGAGA
GAGCTATCCGATAAAACATCTCACCGATCCCACGCCCGATCGGTCTGATG
ATCTTGATGGTACTGGTCGGCCATCAACACTCCAGGAAGATTTAGTCGGG
CCCAGAGCAAGTTCATCGATGGATTCAGCAGCTGAAGCCTATGTTCCTCC
AGTCCCTACTTGGCCATTTCACTGCAGGTTTATTGCCTGCATTTTCTGCC
AGATTATGTGTGTCACCTCCGTGGCGTCTGGTGGCTGCCCAAATCCTTGC
CACGATGACGCCCATGGAACACTTTGGGTGGGATGACACCAAGCATGTGT
CGCCCGTTTTTGGAACAATGCAAATGCAATTCATGGATGAGGAGGAAAGA
GGTGGGTAGCTGTGAGCC
UFO04471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14691-RC | 1675 | CG14691-RC | 73..1167 | 9..1102 | 4935 | 97.6 | Plus |
| CG14691-RA | 1708 | CG14691-RA | 73..1167 | 9..1102 | 4935 | 97.6 | Plus |
| CG14691-RB | 1672 | CG14691-RB | 73..1167 | 9..1102 | 4935 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10755171..10755562 | 400..9 | 1960 | 100 | Minus |
| 3R | 32079331 | 3R | 10754928..10755106 | 579..401 | 895 | 100 | Minus |
| 3R | 32079331 | 3R | 10754688..10754869 | 760..580 | 860 | 99.5 | Minus |
| 3R | 32079331 | 3R | 10754420..10754620 | 960..760 | 815 | 98 | Minus |
| X | 23542271 | X | 951575..951674 | 265..166 | 245 | 83 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:44 has no hits.
UFO04471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:52:47 Download gff for
UFO04471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RA | 70..1176 | 6..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:14 Download gff for
UFO04471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 70..1176 | 6..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:42 Download gff for
UFO04471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14691-RB | 70..1176 | 6..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:42 Download gff for
UFO04471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10754420..10754619 | 761..960 | 98 | <- | Minus |
| 3R | 10754688..10754869 | 580..760 | 99 | <- | Minus |
| 3R | 10754928..10755106 | 401..579 | 100 | <- | Minus |
| 3R | 10755171..10755565 | 6..400 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:14 Download gff for
UFO04471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6580410..6580591 | 580..760 | 99 | <- | Minus |
| arm_3R | 6580142..6580341 | 761..960 | 98 | <- | Minus |
| arm_3R | 6580650..6580828 | 401..579 | 100 | <- | Minus |
| arm_3R | 6580893..6581287 | 6..400 | 99 | | Minus |
