UFO04475.5prime Sequence
1150 bp (968 high quality bases) assembled on 2009-02-25
> UFO04475.5prime
CAGTCGACATGGCAATCGATGATATGAAGGACCTATTGATCGTAAATGTT
TCTGACCAAGAGGATGCAGGTATGTCAGATGACTTGAAGGAAACTGCAAT
GGATTGTAATATGCCCGATGGTGAATCTTCTCTCGTAATCACTGATGGCG
ATTCTATGTCAAAGATCCCTGATGACGCTGCCATGGCAACCAGCGACCCT
AAGAAGAAAAAGAAGAAGGTAAAGAAATTGAAACGTTCCCAAAAAGCCAA
GGATCGTCTTGTTCGCCCGTTGCCCAAGGCCGTGACCTCCAAGGATGCCC
TTATGGTTTTGAAAGAGTTAAAGGGCGTGATAATCGACAACATGCAAATA
AAACAAGACCACGAGGGGAAGAATGTGGCTAACATTGTTGTTAACTCAAA
GAAATACGATGCGGAGGGTTCTTCAGAAAACTCTGCAGGGAATGCAGCTT
GCGAGAAGGCTCTGCGAGAAATCCTAACCACCAAAATGAAAGCTCTGTTG
GCCGAGCCAGAAAACAGCTCGGGAGGCGATGAAGATAATATACTCGAAAA
GATGACCTCTTATGCCGTTTACAAACTTGCTGAGAAATGGAACAGCGACG
CTATTGATGTTGCAGCCCTGTATAATGACGTAAAGAACAAGAAGACGTCG
TCGTCAGTTGGACAGTTGCCCAAATTATGGAAGAATATGCACCCTTGCAT
GGTTCTGATGCAAATGCGCCCCCAGACCACCTTCAAATTTTTAGGTAGCT
CTGGTGAAAACCGTAAAGTTTTCTCAATGGGCGTCTCCGTGGACACTGCG
AGTTTAAGGCTGATGGGCCAAACAAAAAAGATGCACGCCGCAAAGTACCC
GCATAAGTTTGTAACAAACTCCTTGGAACCGACTATCCCACAGCAGCAAG
CTTTCTAGACCTTTCGTTTGGGCGCGCGGGGCCCAGGTAGGTGTCATAAT
CATAATCATAATCATAATCATAATCACAACTTAACCCTATGGAGAAATCC
TGGTCTATGAACTAGTGGCTGGGATTTTCCACCAAATAAAAACCGCCCGG
CGGCAACCGAGACGTTCTGAACAAATTCAGATGGGGTTCTGAGGTCTTAC
CTGGATCTATCACAGGAGATCCAAGCGACTCTCGAATTCAAAATTGCGCC
UFO04475.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12493-RA | 1173 | CG12493-RA | 126..1006 | 9..888 | 4320 | 99.4 | Plus |
| CG12493-RB | 1164 | CG12493-RB | 126..997 | 9..888 | 4175 | 98.4 | Plus |
| blanks-RA | 1268 | CG10630-RA | 439..1075 | 262..888 | 1570 | 83.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4752560..4753372 | 888..77 | 3955 | 99.4 | Minus |
| 3L | 28110227 | 3L | 5497716..5498352 | 888..262 | 1440 | 83.2 | Minus |
| 3L | 28110227 | 3L | 4753544..4753613 | 78..9 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:02 has no hits.
UFO04475.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:27 Download gff for
UFO04475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12493-RA | 98..998 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:55 Download gff for
UFO04475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12493-RA | 118..1018 | 1..901 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:46 Download gff for
UFO04475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12493-RA | 118..1018 | 1..901 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:46 Download gff for
UFO04475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4752548..4753370 | 79..901 | 98 | <- | Minus |
| 3L | 4753544..4753621 | 1..78 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:55 Download gff for
UFO04475.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4752548..4753370 | 79..901 | 98 | <- | Minus |
| arm_3L | 4753544..4753621 | 1..78 | 94 | | Minus |
