UFO04477.5prime Sequence
1101 bp (1014 high quality bases) assembled on 2009-02-25
> UFO04477.5prime
CAGTCGACATGAGCTTATTTCCCTGTATGAAATTGAGGAAACTTTTCCAG
ATGACGAGGCGTCGGTTTGCCAGTGGAGGAGATGGTATTCGACTTATGGT
CGCCGATCGCCAGGTCGTTGGTCATGGAATCAATGGGCGACCCATATACT
TCGATAGTCCGGACTGCCCTTTTCCGGCTATTCGATATCGGGAGGTTAGC
CCAGAGTTGTGTGCCCTACGTGAAAAGGAGTTGGACGACTGGAAGAAGCT
GTCGCTGGATGAAAAGAAGCAATTATACCGATATAGCTTCTGCCAAACAT
ATGCAGAATTCCAGCACATTACACCCGAATGGAAGATGTGTCTGGGCGTC
GCTTTGTGGCTTGTGTCAATCGGAATCGCGATATCGATAACTATGAAGAC
CGTTCTCTATGGAAAACTGCCGGATACGTTTAACGATGAGCGCCAGTCGG
CCCAATTGCGGCGCATCATCCAGCTGCAAATGAACCCAATTACTGGACTA
GCGTCCAAATGGTGCTACCGAGAGAACAAGTGGAAGGCAAGCTTTCTAGA
CCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATA
ATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTG
CTTGGATTCTCACCAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAA
CAAATCCAGATGGAGTTCTGAGGTCATTACTGGATCTATCAACAGGAGTC
CAAGCGAGCTCGATATCAAATTACGCCCCGCCCTGCCACTCATCGCAGTA
CTGTTGTAATTCATTAAGCATTCTGCCGACATGGAAGCCATCACAAACGG
CATGATGAACCTGATCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTAT
ATATTTGCCCATGTGAAACGGGGCGAGAGTTGTCCATATTGGCCACGTTT
AATCAACTGTGAAACTCACCCAGGATTGCTGAACGAAAAACATATTTCTC
ATAACCCTTTAGGAAATAGGCAGTTTCACCGTACACGCCCACATCTTGCA
ATTATTGTGTAAAACTGCGAAATCGTCTGAATCACTCGAGCATGAACCGT
C
UFO04477.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10396-RA | 667 | CG10396-RA | 63..596 | 3..536 | 2640 | 99.6 | Plus |
| CG10396-RB | 672 | CG10396-RB | 113..601 | 48..536 | 2430 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5354119..5354652 | 3..536 | 2640 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:42 has no hits.
UFO04477.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:25 Download gff for
UFO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 61..600 | 1..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:47 Download gff for
UFO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 61..600 | 1..542 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:37 Download gff for
UFO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10396-RA | 61..600 | 1..542 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:37 Download gff for
UFO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5354117..5354652 | 1..536 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:47 Download gff for
UFO04477.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1241622..1242157 | 1..536 | 99 | == | Plus |
