UFO04478.5prime Sequence
1132 bp (1026 high quality bases) assembled on 2009-02-25
> UFO04478.5prime
CAGTCGACATGTTCCATAACTCAAATTTTTTCGAGCCGGGCAAATCGAAG
CCAGAGCGAAGCTTCGTCCAATTGGCGGTGAAGCAAAACCAACGCCTCGA
TGGGCGGCGCTCCAACGAGTCCCGCGATGTGGAGCTGACCTTCGGCAAGG
ATTGGGGCTCCGTGGCGGTGTCCATGGGCGATACGAAGGTACTGGCCCAA
GTGACCTGCGAAATGGGACCGCCGGCCTTGTCGCGGCCCAACGAAGGCAA
AATCCACCTGAACGTATATCTTGGCGGTGTTGCTTTTCTGGACGAGGCAC
ATACCACACATGACCAGCGATCGCTAAAACTGAACTCCCTGCTCGAGAGG
ACCTTCCGCAGCTCTAGAAGCATCGATCTGGAATCTCTGTGCGTGGCCGT
CGAGAAGCATGTGTGGTGCATCCGTGTCAACGTCAATGTGCTCAATCACG
ACGGGAATCTGTATGACGCCAGCACCATAGCCACTTTGGCTGCATTGATG
CACTTCCGTCGACCGGATGTCTGGTATAAGGACGGCGAACTGCGCATCTT
TAAGAAAAAGGAGCGCGAATTCATTCCACTGCTTTTCCACCACTATCCCG
TCAGTGTAACCTACTGTGTTTACAAGAGCAGTGTGCAACCAATACTGGAT
CCTACGCTGCTGGAGGAGAACGCCGCCGATTCGGTAATTGTCCTGAGCTT
TAACTCCTTCCAGGAGCTGTGCAGCCTGACTGCCGGAGGCACTGCACCCA
CAAATGCCCGTATCATCATGCAGTGTGCCCGCAATGCGGCGGTTCGTTGC
AAGTCTCTGTTGAATTTCGTACGCAAAGCTTTGGCGCTGGACGAAGAGTG
TCGATCGCAGGCGATCAATCGGTCGATGGGCTGGTGGCACTGATTTTAAA
TACGGAGCACAGTTGAGCTACAACAACTGATGGGCAGACAGAAACAGAGC
AGCACCTCCGCCAAGCGAGAAATGCAGTTGGATAATAACGAGAGCATGGA
CGCCTGGTGGCCACGAAGAGCCGTCAAGAAGAAGTGCTGCGCCACGATGG
ACACCACCGACTGCTGCCAACGATGAGGACTCCAGAACTGCCCATGCCTC
GAGCAGCATCGAGGCAGCTTAAAGGCACAGTC
UFO04478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rrp45-RB | 1647 | CG9606-RB | 137..1241 | 9..1097 | 5000 | 97.8 | Plus |
| Rrp45-RA | 1599 | CG9606-RA | 137..1241 | 9..1097 | 5000 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16789977..16790514 | 996..465 | 2375 | 98.7 | Minus |
| X | 23542271 | X | 16790674..16791130 | 465..9 | 2270 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:48:34 has no hits.
UFO04478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:24 Download gff for
UFO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 18..1137 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:52 Download gff for
UFO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 100..1219 | 1..1108 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:14 Download gff for
UFO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rrp45-RA | 133..1252 | 1..1108 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:14 Download gff for
UFO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16789855..16790513 | 466..1108 | 96 | <- | Minus |
| X | 16790674..16791134 | 1..465 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:52 Download gff for
UFO04478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16683888..16684546 | 466..1108 | 96 | <- | Minus |
| arm_X | 16684707..16685167 | 1..465 | 98 | | Minus |
