UFO04480.5prime Sequence
1137 bp (1041 high quality bases) assembled on 2009-02-25
> UFO04480.5prime
CAGTCGACATGAATTTTTGTTCAGTGCCTTACGAAGCTGACTACGGCATG
TACGCCGATTCCAAGATGAAGAGCGTTCCTCAGTACCCCCTGAGCATGGG
AGTCGGTCAGGGTCAAGGACAGTCCATGGCCATGCAGCCCCTGAATCCAC
CGCAGATGAATCTGCAGATGCAGATGCCCGTGTGCCAGTCGGGCGCTTCG
TCGTACCCAATGCAGGGTATGCCGCTGGGCATGATGCAAGGGGGCAATCA
GATGACCCCCATGTCCACGATGTCCACCCAGCTGCCGATTGGAGCGGTGA
CTCCCCTGAGCAGCATGACCATGATGCCCATGATGGGCAATCCCATGGGC
GCCATCGATGCCCCCGGGATCAATGCAGTGCTGCCTGACCTGCAGCCGAT
GACCTCGATGGGTCAGATGCAGCCGCTGCAACAGTACAATCCCAGTGGAT
CTACCACCCAAATGCATCAAGGACGTCTGACGGGCGGCTGCAATGCTGTG
ATGTCTGCGCCCTGTCCCTCGTCGCCCTCGCAAGCTGGCGGCTGGAGCTC
CGGTCCCAGCCCCAACCAAATGATGAACAGCTCCAATATGTGGCAATACA
GTCAGCCTATGCAGAGTCACCAGCCGCAGTACCACCAGCAGCACCAGCAG
CAGCAGCAACAGCAGCAGCAGCACTATCAGCAGCCGAGCCAGGGACACCA
ACAGGTCAACCGGATGAAGACCTCCTACGACGCTCCCATGTACCGGGATA
TGCGGAACGGTCTAAACGCACCATCGATACACGATTCATCGAAGTACAGC
AAAGGCAATCAATCATTCAATTGTGGAAAAGCGGTTAGCAAGGTCCCCCA
TTGGCGTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATATCATAATCATAATCATAATCATAATCACAACTAGCCTAGAG
ATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGC
GGCAACCGAGCGTTCTGAACAATTCAGATGGAGTTCTGAGGTCATAACTG
GATTCTATTCAAAGAGTCCAGCGAGCTCGGATATCATACGCTCTCGCCTT
GCCACTCATGCCATATCGTTGTGTATTCATAAGACAT
UFO04480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3124-RA | 1179 | CG3124-RA | 146..994 | 9..857 | 4215 | 99.8 | Plus |
| CG3124-RB | 1206 | CG3124-RB | 146..904 | 9..767 | 3765 | 99.7 | Plus |
| CG3124-RB | 1206 | CG3124-RB | 931..1021 | 767..857 | 455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23283153..23283855 | 766..64 | 3485 | 99.7 | Minus |
| 2R | 25286936 | 2R | 23283017..23283076 | 826..767 | 300 | 100 | Minus |
| 2R | 25286936 | 2R | 23283912..23283968 | 65..9 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:12:58 has no hits.
UFO04480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:22 Download gff for
UFO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 138..994 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:38 Download gff for
UFO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 138..994 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:53:42 Download gff for
UFO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3124-RA | 138..994 | 1..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:53:42 Download gff for
UFO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23282928..23282959 | 826..857 | 100 | <- | Minus |
| 2R | 23283018..23283076 | 767..825 | 100 | <- | Minus |
| 2R | 23283153..23283853 | 66..766 | 99 | <- | Minus |
| 2R | 23283912..23283976 | 1..65 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:38 Download gff for
UFO04480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19170451..19170482 | 826..857 | 100 | <- | Minus |
| arm_2R | 19170541..19170599 | 767..825 | 100 | <- | Minus |
| arm_2R | 19170676..19171376 | 66..766 | 99 | <- | Minus |
| arm_2R | 19171435..19171499 | 1..65 | 95 | | Minus |
