UFO04484.5prime Sequence
1118 bp (1009 high quality bases) assembled on 2009-02-25
> UFO04484.5prime
CAGTCGACATGAATGCCCTGCGGCAGTTCTACCTGGAGATCCCGGTGGTC
ACACGAGCCTACACCACGGTCTGCGTGCTGACCACCTTGGCGGTGCACCT
GGACCTGGTGTCGCCGCTGCAGCTCTACTTCAATCCCACGCTGATTGTGC
GCAAGTTCCAGATCTGGCGCTTGGCCACCACATTCCTGTACTTTGGCACA
ATAGGCATCAGTTTCTTTTTCAATATGGTGTTTACATATCGATATTGTCG
AATGTTGGAGGACGGATCTTTCCGCGGACGCAGCTCCGACTTTGTCATGA
TGTTCATCTTTGGCGGCGTGCTAATGACCTTCTTCGGAATCTTCGTCAAC
CTGTTGTTCCTGGGCCAGGCCTTCACATTAATGCTGGTCTATGTGTGGTC
ACGACGCAATCCACTGGTGCCAATGAATTTCTTCGGGGTGCTTAACTTCC
AGGCGCCGTACCTTCCGTGGGTGCTCCTCTGCTGCTCCATGATTCTGGGA
AACACCGTGTGGGTGGATGTCATCGGCATGGGTGTTGGCCACATCTACTA
CGTGCTGGAGGACGTCTATCCTACACTGTCCAACGGCTACAGACTGATCA
AAACCCCCTACTTTTTGAAACGTCTCTTCAATGAGCACATCGAACGCAAC
TTCCAGGCGGCTGCTGAGGATCGACCTGGCGGATTTCCTTGGGGCGGAGA
GGGTCAGCCCCTGCTACCGGAAGAGATTGCGGCTGATGGACAGGATGAGG
AGCCAGCGAATCGAGCGGCGCCTGTTGCTGCCGCGCCGCAAGCAAGCTTT
CTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAA
TCATAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGAC
TAGTGCTTGGATTCCCCACCAATAAAAAACGCCCGGCGGCAACCGAGCGT
TCTGAACAAATCCAGATGGAGTTCTGGAGGTCATTACTGGATTTATCAAC
AAGAGTCCAAGGGGAGCCTCGATATCCAATTACGCCCCGGCCCTGCCACT
CATTCGGCAGTACTTGTTTGTTATTTATTTAAGCATTTCTGCCGCAACAT
ATGGGAGCCAATCAACAA
UFO04484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Der-2-RA | 1390 | CG14899-RA | 269..1052 | 8..791 | 3920 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:26:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16483262..16483784 | 617..95 | 2615 | 100 | Minus |
| 3R | 32079331 | 3R | 16483032..16483206 | 791..617 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 16483868..16483955 | 95..8 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:26:06 has no hits.
UFO04484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:29 Download gff for
UFO04484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14899-RA | 442..1238 | 1..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:07 Download gff for
UFO04484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Der-2-RA | 262..1058 | 1..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:25 Download gff for
UFO04484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Der-2-RA | 262..1058 | 1..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:25 Download gff for
UFO04484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16483026..16483206 | 617..795 | 98 | <- | Minus |
| 3R | 16483263..16483783 | 96..616 | 100 | <- | Minus |
| 3R | 16483868..16483961 | 1..95 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:07 Download gff for
UFO04484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12308748..12308928 | 617..795 | 98 | <- | Minus |
| arm_3R | 12308985..12309505 | 96..616 | 100 | <- | Minus |
| arm_3R | 12309590..12309683 | 1..95 | 96 | | Minus |
