UFO04488.5prime Sequence
1132 bp (1021 high quality bases) assembled on 2009-02-25
> UFO04488.5prime
CAGTCGACATGTCACTATTTGCGTTTCTCAAGAGCCGCACTGCGTTCTGG
CTGAGCTTCACCGGCACGACGACGGGACTGGCCTTCTTCGTGAAGGATCT
TATGCAAGGCGGTCAGTTCACCAAAGAAACCAATGAGACCGGCAAGGTGT
TTATTGTCACCGGTGCCAACACGGGGATCGGCAAGGAGACGGTGAGAGAG
ATTGCGAAGCGAGGTGGCACCGTCTACATGGCATGCAGAAACCTAAAGAA
ATGTGAGGAGGCTCGCGAGGAAATCGTGCTGGAAACGAAGAACAAATATG
TGTACTGCCGGCAATGTGACCTGGCTTCCCAGGAGTCCATCCGTCACTTT
GTTGCCGCCTTCAAGAGGGAACAGGAGCACCTGCACGTACTGATCAACAA
CGCCGGTGTTATGCGCTGTCCCAGATCTCTCACCTCAGATGGCATCGAAC
TTCAGCTGGGGGTTAATCACATGGGTCATTTCCTGCTTACCAATTTACTG
TTGGATCTACTCAAGAAATCCTCACCCAGTCGGATTGTAAATGTATCCAG
TTTGGCACACACTCGAGGAGAAATAAACACTGGCGATCTGAACAGTGACA
AATCCTACGATGAAGGCAAGGCCTACAGCCAGAGCAAGTTGGCCAATGTA
CTCTTCACAAGGGAGTTGGCCAAACGATTAGAGGGCACCAACGTAACGGC
GAATGCCCTGCATCCAGGTGTGGTGGACACAGAAATAATCAGGCACATGG
GATTCTTCAATAATTTTTTTGCTGGACTCTTTGTTAAGCCTTTGTTTTGG
CCCTTTGTTAAGACTCCGAGAAATGGTGCTCAGACCTCGTTGTATGTTGC
TCTGGATCCCGAGCTAGAAAGGTGACAGGACAATACTTCAGCGACTGCAA
ACTGAAGAAATGGCGCCCGCTGCCACCGACACCCAAACGGCAAGTGCTTT
GGGCAGTCAGTGAAAAGTGGACGAAGCTCACGATGATTAAAATACAAGCA
AGCTTTCTAGACCATTCGTTTGGCGCCGCCGGGCCCAGGTAGTGGTCTTA
TCATAATCATAAATCCAATCCTAATCCACACCTAGCCTAGAGATCTCTGG
TCATGACATATGCCTGATCTCCACCAATTAAA
UFO04488.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30491-RB | 1088 | CG30491-RB | 23..1015 | 9..997 | 4820 | 99.3 | Plus |
| CG30491-RA | 1414 | CG30491-RA | 349..1341 | 9..997 | 4820 | 99.3 | Plus |
| CG2065-RB | 1233 | CG2065-RB | 186..757 | 102..673 | 595 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7656154..7656415 | 514..775 | 1310 | 100 | Plus |
| 2R | 25286936 | 2R | 7656471..7656697 | 775..997 | 895 | 96 | Plus |
| 2R | 25286936 | 2R | 7655571..7655737 | 95..261 | 835 | 100 | Plus |
| 2R | 25286936 | 2R | 7655944..7656100 | 359..515 | 785 | 100 | Plus |
| 2R | 25286936 | 2R | 7655792..7655891 | 259..358 | 500 | 100 | Plus |
| 2R | 25286936 | 2R | 7655420..7655506 | 9..95 | 435 | 100 | Plus |
| 2R | 25286936 | 2R | 7664040..7664174 | 102..236 | 435 | 88.1 | Plus |
| 2R | 25286936 | 2R | 7666696..7666901 | 525..730 | 280 | 75.7 | Plus |
| 2R | 25286936 | 2R | 7666153..7666243 | 102..192 | 245 | 84.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:21 has no hits.
UFO04488.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:20 Download gff for
UFO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 293..1290 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:47 Download gff for
UFO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1346 | 9..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:10 Download gff for
UFO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30491-RA | 349..1346 | 9..1005 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:10 Download gff for
UFO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7655420..7655505 | 9..94 | 100 | -> | Plus |
| 2R | 7655571..7655736 | 95..260 | 100 | -> | Plus |
| 2R | 7655794..7655891 | 261..358 | 100 | -> | Plus |
| 2R | 7655944..7656100 | 359..515 | 100 | -> | Plus |
| 2R | 7656156..7656415 | 516..775 | 100 | -> | Plus |
| 2R | 7656472..7656697 | 776..997 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:47 Download gff for
UFO04488.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3542925..3543010 | 9..94 | 100 | -> | Plus |
| arm_2R | 3543076..3543241 | 95..260 | 100 | -> | Plus |
| arm_2R | 3543299..3543396 | 261..358 | 100 | -> | Plus |
| arm_2R | 3543449..3543605 | 359..515 | 100 | -> | Plus |
| arm_2R | 3543661..3543920 | 516..775 | 100 | -> | Plus |
| arm_2R | 3543977..3544202 | 776..997 | 96 | == | Plus |
