UFO04489.5prime Sequence
1121 bp (1032 high quality bases) assembled on 2009-02-25
> UFO04489.5prime
CAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACGAGGAAATA
ATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCAGACGTGGA
CTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAAACTTAATC
TCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGGTGGTGATT
ATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATATTGAACTC
ACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCATGAGCCGT
TTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCGGTGCCCAG
GACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGTGCACTCAA
AGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTTTGTGCCCG
ACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCAAGGGTGAT
TACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGCATCGCCAG
TGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATTGTGGCAAC
TTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGCTGCACAAA
AGCACGGCTGGCGAAAAGTTTCACTTTGTGATGGATAAGCTGATGAAGTT
CCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTTGCAGTCCG
GTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCGTCCAAAGC
AATGTGGTTCCCCCCGTACTAGAAGCCACTTTTGATATTCGCATAGCCAT
CAACCAGAATGCCGATGCAATGGAGAATCAGATTCGCGAGTGTGCAACGA
AGTCGTGGTGGAGTGGAACTGGATTTCACGCTGAAGTGCCCCTCGTGGTG
ACAGATAGACGACTCATTCCCTACTGGCTGGGCTTCAAAAGGGACTAGAT
GAACTAGTTGATCACCCATACCGAGGTTCCCGGCGCAACGAATAGCTTCT
ACGTCGCAGGGATCCGCTCTGGATTCCCCATCAACACCCGGTGCTGCTGC
CCAACCTGAAGAATCCGGGCG
UFO04489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17110-RB | 1677 | CG17110-RB | 82..1140 | 9..1055 | 4950 | 98.4 | Plus |
CG17110-RC | 2911 | CG17110-RC | 1573..2631 | 9..1055 | 4950 | 98.4 | Plus |
CG17110-RA | 1520 | CG17110-RA | 182..1240 | 9..1055 | 4950 | 98.4 | Plus |
CG17110-RC | 2911 | CG17110-RC | 362..916 | 335..889 | 395 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23093830..23094321 | 106..597 | 2460 | 100 | Plus |
3R | 32079331 | 3R | 23094380..23094794 | 598..1005 | 1745 | 98.1 | Plus |
3R | 32079331 | 3R | 23093679..23093775 | 9..105 | 485 | 100 | Plus |
3R | 32079331 | 3R | 23095959..23096141 | 185..367 | 240 | 75.4 | Plus |
3R | 32079331 | 3R | 23092285..23092509 | 335..559 | 225 | 73.3 | Plus |
3R | 32079331 | 3R | 23092753..23092892 | 750..889 | 205 | 76.4 | Plus |
3R | 32079331 | 3R | 23099861..23099980 | 248..367 | 195 | 77.5 | Plus |
3R | 32079331 | 3R | 10676732..10676856 | 368..244 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:44:40 has no hits.
UFO04489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:19 Download gff for
UFO04489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 173..1243 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:48 Download gff for
UFO04489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 173..1243 | 1..1060 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:34 Download gff for
UFO04489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17110-RA | 173..1243 | 1..1060 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:34 Download gff for
UFO04489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23093670..23093775 | 1..105 | 96 | -> | Plus |
3R | 23093830..23094321 | 106..597 | 100 | -> | Plus |
3R | 23094380..23094794 | 598..1005 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:48 Download gff for
UFO04489.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18919392..18919497 | 1..105 | 96 | -> | Plus |
arm_3R | 18919552..18920043 | 106..597 | 100 | -> | Plus |
arm_3R | 18920102..18920516 | 598..1005 | 98 | -> | Plus |