Clone UFO04489 Report

Search the DGRC for UFO04489

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:44
Well:89
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG17110-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04489.5prime Sequence

1121 bp (1032 high quality bases) assembled on 2009-02-25

> UFO04489.5prime
CAGTCGACATGTGCACTTGCACGGAACAATGGAAGAACGACGAGGAAATA
ATCATTTTCCAGGAGTATTTGCGCATTCCCTCGGTGCATCCAGACGTGGA
CTACACTGCATGCGTGGAGTTCCTAAAACGCCAGGCTAACAAACTTAATC
TCCGCGTGGACGTGGTGTATCCTGTTGTGCCTTCGAAACCGGTGGTGATT
ATGAAGTGGCTGGGCAAGCATCCCGAGCTGAAATCCATTATATTGAACTC
ACACATGGACGTGGTGCCCGTGTTTCCCGAAAAGTGGACCCATGAGCCGT
TTGGTGCCCACATAGACGCCCAAGGCCGGATTTATGCACGCGGTGCCCAG
GACATGAAGTCCGTGGGATGTCAGTACATGGCTGCGGTCCGTGCACTCAA
AGCCAGTGGCTATCAGCCAAAAAGGACCGTATATTTGACTTTTGTGCCCG
ACGAGGAAACTGGCGGACACATGGGCATGGCTGAATTCGTCAAGGGTGAT
TACTTCAAAGCCATGAATGTGGGCTTTAGCCTGGACGAGGGCATCGCCAG
TGAAGATGACACTTATCCTGTATTTTACGCCGAGCGTACATTGTGGCAAC
TTCGATTTAAATTCAGTGGCACTTCAGGTCATGGATCGCTGCTGCACAAA
AGCACGGCTGGCGAAAAGTTTCACTTTGTGATGGATAAGCTGATGAAGTT
CCGAGAAACCCAGGTCAAGCTACTGGCCGAGGACTCCTCCTTGCAGTCCG
GTGATGTGACCACTTTGAACCTGACCCAACTCAACGGTGGCGTCCAAAGC
AATGTGGTTCCCCCCGTACTAGAAGCCACTTTTGATATTCGCATAGCCAT
CAACCAGAATGCCGATGCAATGGAGAATCAGATTCGCGAGTGTGCAACGA
AGTCGTGGTGGAGTGGAACTGGATTTCACGCTGAAGTGCCCCTCGTGGTG
ACAGATAGACGACTCATTCCCTACTGGCTGGGCTTCAAAAGGGACTAGAT
GAACTAGTTGATCACCCATACCGAGGTTCCCGGCGCAACGAATAGCTTCT
ACGTCGCAGGGATCCGCTCTGGATTCCCCATCAACACCCGGTGCTGCTGC
CCAACCTGAAGAATCCGGGCG

UFO04489.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG17110-RB 1677 CG17110-RB 82..1140 9..1055 4950 98.4 Plus
CG17110-RC 2911 CG17110-RC 1573..2631 9..1055 4950 98.4 Plus
CG17110-RA 1520 CG17110-RA 182..1240 9..1055 4950 98.4 Plus
CG17110-RC 2911 CG17110-RC 362..916 335..889 395 72.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23093830..23094321 106..597 2460 100 Plus
3R 32079331 3R 23094380..23094794 598..1005 1745 98.1 Plus
3R 32079331 3R 23093679..23093775 9..105 485 100 Plus
3R 32079331 3R 23095959..23096141 185..367 240 75.4 Plus
3R 32079331 3R 23092285..23092509 335..559 225 73.3 Plus
3R 32079331 3R 23092753..23092892 750..889 205 76.4 Plus
3R 32079331 3R 23099861..23099980 248..367 195 77.5 Plus
3R 32079331 3R 10676732..10676856 368..244 190 76.8 Minus
Blast to na_te.dros performed on 2014-11-28 20:44:40 has no hits.

UFO04489.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:19 Download gff for UFO04489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 173..1243 1..1060 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:48 Download gff for UFO04489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 173..1243 1..1060 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:27:34 Download gff for UFO04489.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17110-RA 173..1243 1..1060 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:27:34 Download gff for UFO04489.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23093670..23093775 1..105 96 -> Plus
3R 23093830..23094321 106..597 100 -> Plus
3R 23094380..23094794 598..1005 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:48 Download gff for UFO04489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18919392..18919497 1..105 96 -> Plus
arm_3R 18919552..18920043 106..597 100 -> Plus
arm_3R 18920102..18920516 598..1005 98 -> Plus