UFO04490.5prime Sequence
1127 bp (1024 high quality bases) assembled on 2009-02-25
> UFO04490.5prime
CAGTCGACATGGTTTTCGTTCACGTTTCGGAGAAGGAGGGCGACGAGCCC
ATCGAGCTGCCGGCTGAGGAGGATGGCACTTTGCTGCTGTCCACACTGCA
GGCGCAGTTTCCGGAATCTAGCGGTCTGCAGTACCGCAACGTGGACACGA
AGGCGGTGCGTGGAGTTCGCTCCAACGAGGGCCGACTGTATTCGCCCAGC
GAAGAAACCGGCTGGGGCGAGTACCATTACTTTTGCGTCTTTCCCAAGAA
GAACAAGCGCCAGAGCGAAGATAACTTGGAAAACTCAACTGCCAAAACCA
AGCGCACTGAGGCCCATCTGCGCTGCTTTGATCTCATCGTGCTCGGCTTG
TCCTATAACACCACCGAGCAGGATTTGCGTGAGTACTTCGAGACCTACGG
CGATGTGGTGAAGGCTGAGATCAAGAAGGACACCAGGTCGGGCCACTCCA
AGGGTTTCGGGTTCGTGCGCTTCGGCTCTTACGATGTCCAGATGCACGTA
CTCTCTAAGCGCCATTCAATTGATGGTCGCTGGTGCGAGGTTAAGGTGCC
CGCCTCGAGGGGCATGGGCAATCAGGAGCCTGGCAAGGTATTCGTCGGCC
GCTGCACCGAGGACATAGAGGCGGATGACTTGCGCGAGTACTTCTCAAAG
TTTGGCGAAGTGATCGACGTGTTCATTCCCAAGCCCTTCAGGGCTTTTAG
CTTTGTAACCTTTCTCGATCCGTATGTACCACGCGTCGTGTGCGGAGAGA
AACACATAATCAAGGGAGTTTCGGTCCATGTGTCGACTGCTGACAAAAAG
AACGTGCAGAACAAAAACCAACTGTTCCAGACCAACAACTACAACAATTT
GGACAACAACTTTAAGATGCAACCGGCCAACAACTTTAGAATGCACCCAG
CCCACAACTTTAGCATGCATTCATTTAATCCACATGGTTACCAAATGAAT
CGCGTCATGAACGCAAGCTTTCTAGACCATTCGTTTGGCGCGCCGGCCCA
GGTAAGTGGTCAAAATCATATCATATCATAATCATATCCCACTAGGCCTA
GAGATCCTGGCCGTGACTAGGGCTTGGATTCTAACAATAAAACGCCCGGC
GGCAACCGACCGTCTGAACATCTGATG
UFO04490.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7804-RB | 1782 | CG7804-RB | 401..1354 | 9..962 | 4755 | 99.9 | Plus |
| CG7804-RA | 1722 | CG7804-RA | 341..1294 | 9..962 | 4755 | 99.9 | Plus |
| TBPH-RF | 1930 | CG10327-RF | 119..955 | 9..845 | 2385 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15472625..15473578 | 962..9 | 4755 | 99.9 | Minus |
| 2R | 25286936 | 2R | 23860835..23861143 | 558..250 | 900 | 86.1 | Minus |
| 2R | 25286936 | 2R | 23861207..23861446 | 248..9 | 810 | 89.2 | Minus |
| 2R | 25286936 | 2R | 23860570..23860776 | 766..560 | 510 | 83.1 | Minus |
| 2R | 25286936 | 2R | 23860436..23860513 | 845..768 | 195 | 83.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:26 has no hits.
UFO04490.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:18 Download gff for
UFO04490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:44 Download gff for
UFO04490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 9..962 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:29 Download gff for
UFO04490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7804-RA | 341..1294 | 9..962 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:29 Download gff for
UFO04490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15472625..15473578 | 9..962 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:44 Download gff for
UFO04490.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15465725..15466678 | 9..962 | 99 | | Minus |
