UFO04491.5prime Sequence
1143 bp (1042 high quality bases) assembled on 2009-02-25
> UFO04491.5prime
CAGTCGACATGGATGCTCAAGGAGACCAGGATATGCGGCTGGATCCGCCG
CTCTTTGTGACCTGTGACATGGAGCAGTTTCGCGATCCAAACAAGAAGCG
TGCCGCCAACGATGCCTGCGAGGAGCTGGACAAGCTGGATGCCCAGGACG
AGATCAGTGTGTCGAGTATCATTTCGGCGCTATTGAGACCGATTGAGCCC
TCGGACGATCAGTACAAGGTGTGCGACTGGGGCATCAATCCCAAGCAGTT
TATGCCCACCAAACAGGCGATCATTTTCAAGGAACAGTTGTTCATATCGA
AGTTGCGGAATACAAATTGCAAGCTAAATGAAAATCTAAAAATCTTCTTT
GAGCGGGAACTTGAGCAGATTGGACGCTTCTGTTTGAATGTGGAGGAATC
CTTTGATGGCTATGTGATCTTCAGCAGCAGCAAAATGAAGAAGGGCAAGG
GTATGACGGAATGTGGTCACCAGTTAAAGGGGAAGTACGATGACAAGTTC
CTTCTCATCTGCGAGAAGAGATCGGAGTTCGACCGAATCGACAATACTCG
GGTAGAGAAGACGCTGGAGTTGCGAAACCATGCCGATTTGATGCTAACCG
CCATTCGCGAAACCAAAATCAATGAGGAAGTGCAGCGCTTCAAGGCTCGC
ATCGATATCAAGGATCGCGATCATGTGTTCGTCCTGGATGGCGGGATTAT
GCTGCTGATGCGACACCTAGTGTGCAACAATTTTGTGGGCAACTTCGAGT
ACTACACAATGAATTTGTATGGCCGGGTCCTTCGCTGCAATCTGGTTGTT
TCCAAGGAGCGCAAGGAGGTGCGAATTTTCTATCGCACATACAAGAATGT
CGTGCACATCTTCACCCAGCATGTTTCAACGATGAGCTCCAGGATGTGGC
CGAGACCTTCATGACTCCTGAGGGCCGGATTGTTCTGCATTATTGGCGTG
CTATAACTACCTTTGCATGCCGCCTGCATGCACACGAAGAGAAAGGAACC
TATTCCTACCCAAATTGGAACTAATGTGGGCGCAAAACGAACAGCTTCTC
GCAGGTTCCGGGAGCTCAAGGCCTCTATTACGAGAAACGCCACACAGCTA
TTCTGGAACAGCAATCCAAGCCGTGGGCCGAATTTGGCCAGAA
UFO04491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13243-RB | 1467 | CG13243-RB | 106..1212 | 9..1115 | 5160 | 98.4 | Plus |
| CG13243-RA | 1421 | CG13243-RA | 106..1212 | 9..1115 | 5160 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15852752..15853830 | 12..1086 | 4965 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:09:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 1579..1617 | 514..552 | 114 | 76.9 | Plus |
UFO04491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:17 Download gff for
UFO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 18..1131 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:04:48 Download gff for
UFO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 99..1212 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:03 Download gff for
UFO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13243-RA | 99..1212 | 1..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:03 Download gff for
UFO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15852750..15853855 | 8..1115 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:04:48 Download gff for
UFO04491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15852750..15853855 | 8..1115 | 98 | | Plus |
