UFO04493.5prime Sequence
1108 bp (1012 high quality bases) assembled on 2009-02-25
> UFO04493.5prime
CAGTCGACATGGTACAGATTTCGCAGACAGAGGAGGACATCAAGATCTCC
ATCGAACTCAATCGTCTGGTAACCCGCAAGCCGGACGTTGTTCTCCTTCC
GCAGTACTTAAAGTTCAACAATCCACCCATCTTCTTTGAGCGTCATCTGG
CCCAGGAGATCGACGAGATGGCCAGCTTTTGTCGCATTTTTAAGAACGAA
GCCCGCATTGTGCTGGTTAAGAAAGAGAAGGGCTTATGGCCTGAGATGTT
CCAGAAGCTGGACAAGGAGGCACTCATGCAGAAGCGCCTAGAGATCGCCG
ACCTCATCGTGGAGCGCAACAAGAAGCGGGATGAAAAGGCACTGGAACGT
TACGATAACAAGCGGCGGGCGGAGATCCAGAAGGAGATCCAGCGGGAGAC
AGATATGCGCGAGCGTGTGAAGCAGTTCCAGGAGAACTCGGTGCGCGAAG
CTCTGGTAGTGGATGTACGCAAGGAGGCGAAAGCTACGCCCAAGCCAGAT
ACACTGCAGTATCCGCCATCGTCGGGAGGCGCCAGTCGCCTGGCCACGCC
CCTCATGCGTCCGCCCATGAGCTCCGTTCGTGGCAGCGGACGGATCAACG
TAAACTTCACCACACAGCACAAGCGGGTCACGCCGAAGCGGGAGTCGCAG
GCCGCTATGGAGAAGGCATATGCCGCCGCCGGTGGACCCAATGCGAATGT
CCAGTCGCCGATGGAGAGCGTCGATGAAGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATT
CTCACCAATAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAG
ATGGAGTTCTGAGTCATTACTGGATCTATCAACAGAGTCCAAGCGAGCTC
GATATCAAATTACGCCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAAT
TCATTAAGCATTCTGCGAAATGCAAGCATCAAACGGCATGATGACCTGAT
CGCAGCGGCATAAGACTTGTCGCCTTGCCATATATTTGCCCATGGTGAAC
GGGGCCAA
UFO04493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:18:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14921-RA | 953 | CG14921-RA | 129..849 | 8..728 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11120746..11121301 | 728..173 | 2780 | 100 | Minus |
| 2L | 23513712 | 2L | 11121419..11121586 | 175..8 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:18:30 has no hits.
UFO04493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:15 Download gff for
UFO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 90..826 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:21 Download gff for
UFO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 90..826 | 1..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:30 Download gff for
UFO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14921-RA | 121..857 | 1..737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:30 Download gff for
UFO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11120738..11121298 | 176..737 | 99 | <- | Minus |
| 2L | 11121419..11121589 | 1..175 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:21 Download gff for
UFO04493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11120738..11121298 | 176..737 | 99 | <- | Minus |
| arm_2L | 11121419..11121589 | 1..175 | 97 | | Minus |
