UFO04494.5prime Sequence
1116 bp (1014 high quality bases) assembled on 2009-02-25
> UFO04494.5prime
CAGTCGACATGAATTATTTAAGAGTAATTCGGAATAATTGGAAGAAATGC
ACGTTCGGAGCGGCAGTGTCTGTGTATGCGCTGCAAGCGCTGAAAACTCA
CATCGAGATTGAACAACATATGCGGGAATTCGCCTCCAACATTCAGGCCA
ACTGGATATCGGATCGCCCCAAAAAGGTACTGGTGGTCATGAATCCGGTG
GCCAACAAGAAGAGATCGGAGAAGTTTTTTAAGAACTACTGCGAGCCGGT
TTTGCATTTAGCTGGATATTCGGTGGAGATCCTTCGGACGAATCACATTG
GTCATGCCAAAACCTACGTGGAGGAGTTGGCAACGCTACCCGATGCCATT
GTTGTTGCCGGCGGCGACGGCACCTCATCGGAGGTGGTCACTGGGCTGAT
GCGTAGGCGCGGCAATCTCTGCCCGATCACCATCCTTCCGCTGGGACGTT
CGGTGCAGTCCGCATCCAAGCGCATCAACATCTTTGGCGTCAAGGACGTC
GACTATGTGAAAAGTCTTTCGAAAGCCCTTGAACCTATGCTCAAGGATGA
GAGCCAGTACCAGAGTGTGATCCGCTTTGATGTGATCAATGAAGAAGATG
GCAGCAATAGCCAATTGAAGCCCATATTCGGTCTTAATGGTCTGTCCTGG
GGTCTGCTGGAGGACATCGATGCGGCAAAGGATAAGTACTGGTACTTTGG
ACCACTGCGACACTACGCTTCCGCTGCGTCCAAGTCCTTTGCCGATAACT
GGAGCCTTAAGACCGACTATGTGTACACACCGCCGTGTCCTGTCTGCGTT
GACTGTGCTGCTACTGTACAGCGCCAGGAGACCGCCCAGCCTTCTGGCCT
CTTCACCAGAGGCCTCATTAAGTACAAGAATAATCCGGGTGAACCAAGAG
CGCTAGTCAAGACGACATTGCAGCAGAGTTCGAGGAAGCGCTGAGCAGCA
GATAACATCAATTGGTGTCAAACAAGATACTTTGCGGAGCTGGAAAGTCA
GTTATAGCTCCTGCAGCGGCTGGGAGTTTATCAACAATCGAGTCACGTGC
AGCAAATTTACCAGCTGTGTTAGAGACAGACTATTCACTGCATCGAATGT
ATGGCCGGAGAGTTTA
UFO04494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mulk-RA | 1300 | CG31873-RA | 65..1184 | 9..1094 | 4645 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10270449..10271114 | 228..893 | 3300 | 99.7 | Plus |
| 2L | 23513712 | 2L | 10270274..10270394 | 107..227 | 605 | 100 | Plus |
| 2L | 23513712 | 2L | 10270115..10270213 | 9..107 | 465 | 98 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:17:30 has no hits.
UFO04494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-03 11:55:21 Download gff for
UFO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31873-RA | 25..1113 | 9..1069 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:54 Download gff for
UFO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mulk-RA | 65..1153 | 9..1069 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:56:15 Download gff for
UFO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mulk-RA | 65..1153 | 9..1069 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:56:15 Download gff for
UFO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10270115..10270212 | 9..106 | 97 | -> | Plus |
| 2L | 10270274..10270394 | 107..227 | 100 | -> | Plus |
| 2L | 10270449..10271318 | 228..1069 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:54 Download gff for
UFO04494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10270115..10270212 | 9..106 | 97 | -> | Plus |
| arm_2L | 10270274..10270394 | 107..227 | 100 | -> | Plus |
| arm_2L | 10270449..10271318 | 228..1069 | 95 | | Plus |
