UFO04501.5prime Sequence
1111 bp (1003 high quality bases) assembled on 2009-06-09
> UFO04501.5prime
CAGTCGACATGTGTGAAATAAAGCAAAATTTCGTGACACACGATCTGGTG
CACAATCTGCGTTGCAATAAGCGCAGTCCGAAGGTTCGGCACCTCATGAA
AAAGACAAGAGCCTGGCCCGGAGCGCGATTTATGTGCGTTTGTAAGGAGG
GAGACTTGAATACGGCTGCATATTGTTTGGCCGAGTTGATGCACGAGCCG
TTCCAGCCATTTCCCATGGCCACCGTGGCAGTGCATCATTCGATCCGGGA
CGAGTTCATCGAGAGGGTGAGGAGTCGGTTCAGGCAGCTAAAGCCACATG
TGGCCAATCATCCGAATTTCATAAGAGCCGTTAATGAGCTAAAGTATGGG
TTGCGACCAGTGAAATATATTCTGGCCGATGTGGCCGATGCTCCGGCCTG
CGCCAGTCCCATCTTGGTGACGGGAGGCGTCACCCACTTGTTCTTTCCCA
GCGGACCCTCGGGATGTACCACCCTGCATACCTTCAGTAGCATGCGGGAG
GTGGCGCTGATCTTTGGCAAGGAGACGCCCAAATTCGATGCGGTCTACTT
CTTCGATGAGACCATCACAGGTGTCTACATCTTGGCCAAGCTCATCAATT
GTGTGCAGTTCTTTGTGAACTGCATGGATGCCTGCCTGATGGAGATTATG
CCCCACTACTTGGACCACACGCCCATGGTGGTCTACAAGCGAGGTTATCA
CTACGAGACCCTGGAACTTGACCAGCAGTGGAAGATCATCGTGTTCCCCT
ACAGCACCTCCATTCTGAGGCAGTGCTGCTGTCCCACTGGCCAGTGCCGT
TGCTATGCCACCCATACGGCCTGCTGTGAGGATCATTTGCAGAGTGCAAG
CTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATC
ATAATCATAATCATAATCATAATCACACTAGCCTAGGAGATCCTGGTCAT
GACTAGTGCTTGGATTCTCACCAATAACAAACGCCCGCGCACCGGCGTTC
TGAACATCCAGATGGAGTTCTGGAGTCATACTGATCTATCACAGGAGTCC
AGCGAGCTCGATATCAAATTACGCCCCGCCTGCACTCTATCGCGAGTACT
GTTTAATCCAT
UFO04501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5623-RA | 1127 | CG5623-RA | 56..892 | 9..845 | 4095 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15766481..15767239 | 845..87 | 3705 | 99.2 | Minus |
| 3R | 32079331 | 3R | 15767306..15767383 | 86..9 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:53:37 has no hits.
UFO04501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:04 Download gff for
UFO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5623-RA | 56..892 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:40 Download gff for
UFO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5623-RA | 56..892 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:33:12 Download gff for
UFO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5623-RA | 56..892 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:33:12 Download gff for
UFO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15766481..15767239 | 87..845 | 99 | <- | Minus |
| 3R | 15767306..15767383 | 9..86 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:40 Download gff for
UFO04501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11592203..11592961 | 87..845 | 99 | <- | Minus |
| arm_3R | 11593028..11593105 | 9..86 | 100 | | Minus |
