UFO04506.5prime Sequence
801 bp (705 high quality bases) assembled on 2009-06-09
> UFO04506.5prime
CAGTCGACATGATTCAGTACGATACTGTGCAGATCAAGAATGTATCATGG
CAGCCGGAACTGCATACGGAGGGCACCTATGTGTGCTCTTTTCCAGAGCC
CCCGCTGCCGGAGGCCCATCTGAAACCGGGCACCTGGCATGGCCATCTGG
AGCCGTATCAGCGGCTCTTCTATCATCAAACGATGAACTCGGTGCGCTCG
AGCAAGCGGTACCGTGCCAATCCGAACATCCCGAAGGATACGCTGGACTT
TTCGCTGCAGTCGCGCTACGATCACACCCGCGAAGCATTTCCGGACAAGG
TGGACTACGTGATGCAGAGGGAGACGTGCCGCGCCATAAGTAGCTGGTCA
GCTCCTGGGGCGGCCAAGGAAATTGGTTCCCAACTCAAATCATTTCGGGT
GTTGCGCAACACGCGCTTCATTCGGCGCAAGCAGGAGGACGTATTGGGTC
ATCCACTTCGCATAGGCGGTTGTAAGGAAAAGATTCATCCGCACAGCGTG
AAGCTCATTTGCAGCGGTGTCCACAACCAGCTGGTGAACAATGGATTCTC
GCGCCAGACCTCCGACGGCAACTTCTTCCGCTATGCAAGCTTTCTAGACC
ATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGCATAATCATATCTATCTAT
CTATCCACAGCTAGAGTCTGAGTTGTGTCCCTAACCGGCAGCAACAGTCA
GTCGTCCGCAACACTACCGTTCAATGTTATGAGCCAGGACACGCCTGTGA
TCGAGATTGTAGCGATCACCAGGCTGGCCCCGACGATGAGAGCGCGCTAG
G
UFO04506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:30:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5435-RB | 929 | CG5435-RB | 106..681 | 9..584 | 2850 | 99.7 | Plus |
| CG5435-RA | 903 | CG5435-RA | 80..655 | 9..584 | 2850 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:30:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12430277..12430694 | 466..49 | 2090 | 100 | Minus |
| 2L | 23513712 | 2L | 12430075..12430195 | 584..464 | 575 | 98.3 | Minus |
| 2L | 23513712 | 2L | 12430746..12430787 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:30:10 has no hits.
UFO04506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:07 Download gff for
UFO04506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5435-RA | 107..687 | 9..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:09 Download gff for
UFO04506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5435-RA | 80..660 | 9..592 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:03:59 Download gff for
UFO04506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5435-RA | 80..660 | 9..592 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:03:59 Download gff for
UFO04506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12430070..12430193 | 466..592 | 95 | <- | Minus |
| 2L | 12430278..12430693 | 50..465 | 100 | <- | Minus |
| 2L | 12430747..12430787 | 9..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:09 Download gff for
UFO04506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12430070..12430193 | 466..592 | 95 | <- | Minus |
| arm_2L | 12430278..12430693 | 50..465 | 100 | <- | Minus |
| arm_2L | 12430747..12430787 | 9..49 | 100 | | Minus |
