UFO04514.5prime Sequence
1065 bp (968 high quality bases) assembled on 2009-06-09
> UFO04514.5prime
CAGTCGACATGTCGATCTTTGACCATCCCGAACAGCTGAAAATGCTGCAG
GGCCTTCTGAATCCCAATCAGAGAAGAGGCGGCATTGACTACAGCAGTAG
CGAGGATGAGGAGGAGTCAATGGTTGTCAATAAGATGAACCCTGGAACAA
TTGGACGTCCTAATGGGGAGGATGGAACCGCTAAGGGTAAGAAGAAAAAG
AAGCCCAACCCTTTGTGCACTCCCTTGGTGGAGGAAGAGAAAAAACAGCC
CGAGAGTCTGGAAGAATGGCAAGATCAGCAGGAGAAGGAAGACATGGATA
TACTTGAATCGCGGAAGACTCCCGAGTATACGATGACCTATCGCCAAGCA
GTGGGCACTGAGGATGTTTTCTTGCAGATGGGCAATCGCACTGGATCCTC
GGCCAGCTGTGAGGACCTCATTTTGGAGGTTTCCCTGCCGGACGAGGAAA
TGACTGCTGACAAAATGTCGCTCAGCTTGCAGGAAACTGAATTGGATTTG
GGTACATGTTTGTACCGCTTACGATTACCGCTTCCCCATCCCGTCAATGT
TGATCGTTGTCATGCAAAATACGATAGTGAGCTGAAGAAACTACGTCTCA
CTCTGCGCCTGCAGCGCGAACTAGACTATGTTAATTTTGCAAGCTTTCTA
GACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCA
TAATCATAATCATAATCACAACTAGCCTAGGAGATCCTGGTCATGACTAG
TGCTTTGGATTCTCACAATAAAAAACGCCCGGCGGCAACCGAGCGTTCTG
AACAAATCCAGATGGAATTCTGAGGTCATACTGGATCTATCAACAGGAGT
CCAAGCGAGTCGATATCCAATTACGCCGCGCCCTGCCACTCATCCAAGTA
CTGTTGTTATTCTTTAACCATTCTGCCGACTGGAAATCATTCAAAAACGC
ATGAAGAACCTGAAACGCCAAGGATCTCCCCTTGCCCCTAGTGATATATA
TTTTGCCATGGGGAAAAGGGGGAGAAAAATTTGCCATTGGTCCGGTTTAC
GCACACTCGTGCACC
UFO04514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5048-RA | 964 | CG5048-RA | 135..764 | 9..638 | 3105 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14685380..14685642 | 376..638 | 1285 | 99.2 | Plus |
| 3L | 28110227 | 3L | 14685084..14685322 | 139..377 | 1180 | 99.6 | Plus |
| 3L | 28110227 | 3L | 14684902..14685031 | 9..138 | 650 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 21:48:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 1949..2020 | 249..321 | 119 | 64.4 | Plus |
UFO04514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:11 Download gff for
UFO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5048-RA | 170..810 | 1..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:29 Download gff for
UFO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5048-RA | 127..767 | 1..642 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:41:20 Download gff for
UFO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5048-RA | 127..767 | 1..642 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:41:20 Download gff for
UFO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14684894..14685031 | 1..138 | 97 | -> | Plus |
| 3L | 14685084..14685322 | 139..377 | 99 | -> | Plus |
| 3L | 14685382..14685645 | 378..642 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:29 Download gff for
UFO04514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14677994..14678131 | 1..138 | 97 | -> | Plus |
| arm_3L | 14678184..14678422 | 139..377 | 99 | -> | Plus |
| arm_3L | 14678482..14678745 | 378..642 | 98 | == | Plus |
