UFO04516.5prime Sequence
916 bp (746 high quality bases) assembled on 2009-06-09
> UFO04516.5prime
CAGTCGACATGGACTCCCCGCTGAACGATGGCTCTCACCATCCACCGCCG
CACGCTCCCCACCCCCTGGCGGACTATCAGTTTTCTGCGGAGGAGGTGAA
GGCGTTACGTGAGTGCAACACTGAGTCTTTCTTCCAGCGCAGCCTGCCTT
TCGGCACTGGACTGGGCCTGCTGGCCTACTTCGGCGTCAAGAACGGCTAT
TTGCAGGGACACGTCAAGTACGGCGCCGTGCCCAAGGTCGTGATGGGCGT
CATTCTGGGCTACTTTGTGGGCAAGTTCAGTTACCAGCAGAAGTGTGCCG
AGAAGATCATGCGCCTACCCAACTCCCATCTGGGCGAGCTGCTGCGTCAG
CGTAGACAGGGCGGCGGTGTCATCAGCTCCATCACACCGGACGAGAATCT
GGGCAGGGCCTTCACTCTGGCCCCCTTCTCGCCGAGCTCGGCGGACGTGT
ACAGCGATGAGGCGTATCAGCCCGGGAGGAGCACTTCTCTCAATCTGGAC
ACGGAATCGCGCCCTACTTTGTCCGGCCTTGACGACATCTACCGCCCCAC
CCTGGACTCTGGTTCAATGCTGGAGGCGGAGTTGCCCTTGGAGCCGTCTA
AGCCGGGCCAGTCTTACGAGGACCTGCGACGAAGGAACCGAGAAGAGACT
CAAAGCACCAGCAGAGCCTACTCGCGACTTACAACCCCAGTGCGTCACAC
GCCCTGAGAGAAATGACCGTGAGAGACATCGCATCTGATGTGAGTTCAAC
TCTTGGGGGCAGATGCTACTACTACTACTACCATACAGACGCTGTTGTGT
CCCAAAACCGGACAGCAACAGTTAGTAGTAAGCAACACTACCGCCATGTT
ATCAGCCAGGCACGATCGTCAGATTGTAGCGGACCATCCAGAGATGCCCC
GCAGACTGGTCAGCCG
UFO04516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| asrij-RA | 1064 | CG13533-RA | 245..934 | 8..691 | 3255 | 98.7 | Plus |
| asrij-RB | 904 | CG13533-RB | 82..774 | 8..691 | 3215 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22886758..22887248 | 68..558 | 2455 | 100 | Plus |
| 2R | 25286936 | 2R | 22887310..22887418 | 559..666 | 450 | 96.3 | Plus |
| 2R | 25286936 | 2R | 22886642..22886703 | 8..69 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:32:40 has no hits.
UFO04516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:12 Download gff for
UFO04516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asrij-RA | 239..934 | 1..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:48 Download gff for
UFO04516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asrij-RA | 239..934 | 1..691 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:42 Download gff for
UFO04516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| asrij-RA | 239..934 | 1..691 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:42 Download gff for
UFO04516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22886636..22886702 | 1..68 | 94 | -> | Plus |
| 2R | 22886759..22887248 | 69..558 | 100 | -> | Plus |
| 2R | 22887310..22887448 | 559..691 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:48 Download gff for
UFO04516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18774159..18774225 | 1..68 | 94 | -> | Plus |
| arm_2R | 18774282..18774771 | 69..558 | 100 | -> | Plus |
| arm_2R | 18774833..18774971 | 559..691 | 93 | == | Plus |
