Clone UFO04517 Report

Search the DGRC for UFO04517

Clone and Library Details

Library:UFO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2008-06-20
Comments:BD Creator expression clones with C-terminus FLAG HA tag for transgenic expression using PhiC31 integrase system
Original Plate Number:45
Well:17
Vector:pUAST-CFLAGHA-BD-PHI
Associated Gene/TranscriptCG30284-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

UFO04517.5prime Sequence

619 bp (619 high quality bases) assembled on 2009-06-09

> UFO04517.5prime
CAGTCGACATGAAGTCGATTCAGGCCCGGTTGAACCACCGATTCCGAAAA
ACTTTGGCGATGGACAAGCCGTCTAGCAGCAATAGCAATCGAATGAGCAG
GAGCACTTCGAACTGCAGGAGCCCGGCCATAATACGTAGTCCGCTGAACT
CTGAGGAATTTCAGGACTCGGCAACGGCTGCCGCCACACAACAACGGCTT
TTCTGGAGCGGCCAGCGGGCCTCGACGGCGGGCAGGGATGATAAAACCAA
GCCTGATTCGACTGCCGCCGGAAAAAAGAAGCCACCTACGACGACAAGGC
AGTCAAATTTTACCCAGACCGAACGAAGACGGACACATCGCAAGCTGAGT
CCGCGGAGCACGCGTTGCAATTCGGTGGCAGTTACGGCGCTGGTCAGCAG
AGAAAATATACCGCAAACATCCGGGTACAGAAGGCCAGAGGACCTAACCG
CCCGGTGCAGTGCGTCGCACGAGGGGCGCAAGCTTCTGCAGGAGCGGCTG
ATGGTGCGGGTGGACGCACTGTTCAACATGCTCTTCTCTGCCTCGGCGTT
CCTGCAGAGCTTCCATGAGCGGCGCAAGTCCACCGATCCTGAATATGGGC
GTCTGGTCGCGAAATGCCG

UFO04517.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG30284-RB 1083 CG30284-RB 64..673 9..619 2970 99.2 Plus
CG30284-RA 1180 CG30284-RA 77..492 9..424 2050 99.5 Plus
CG30284-RA 1180 CG30284-RA 575..770 423..619 930 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21651508..21651923 424..9 2050 99.5 Minus
2R 25286936 2R 21651230..21651425 619..423 905 98.5 Minus
Blast to na_te.dros performed 2014-11-28 19:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
Osvaldo 1543 Osvaldo OSV 1543bp 8..58 128..177 108 70.6 Plus

UFO04517.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:13 Download gff for UFO04517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..673 9..619 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:53 Download gff for UFO04517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..673 9..619 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:14:38 Download gff for UFO04517.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30284-RB 64..673 9..619 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:14:38 Download gff for UFO04517.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21651230..21651424 424..619 98 <- Minus
2R 21651509..21651923 9..423 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:53 Download gff for UFO04517.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17539014..17539428 9..423 99   Minus
arm_2R 17538735..17538929 424..619 98 <- Minus