UFO04518.5prime Sequence
1101 bp (975 high quality bases) assembled on 2009-06-09
> UFO04518.5prime
CAGTCGACATGCCGGAATTTGAGAACTTTAACGTAAAAACCACAATTGAC
TGCAAACAAGGTGCAGTGCGAGCTGTGCGCTATAATGTTGATGGCACTTA
TTGCTTGAGTTGTGGATCTGACAAGAAGATAAAGCTGTGGAATCCGGCAT
CGGGATTACTGCTTAAGACTTATGGTGGTCATGCGGATGAAGTCACCGAT
GCGGCGGGAAGCTGTGATAGTAGCTATATCGTTTCCGCCAGCTTGGATAA
AAGCATTATCTACTGGGACGTGTCAACGGGAGCACCAGTACGGCGCCTGC
GTAGCCATGCCGGAGGTGTTAGATGCGTCTGCTTCAACGAGGACTCCTCG
ATAGCCATTTCCGGGGGTCGAGATAATGCCGTAATGTGCTGGGACATTCG
AACGCGTCGCCTGGATCCCGTTCAGGTGATGAAGGAGGCCCGGGACTGCA
TCACCACGGTGGCAACCAACGAGAATCGCATCTACGCCGCCTCCTTGGAC
GGATGTGTGAGGACCTACGATATTCGGGTGGGCGAACTTACCTGCGACAA
AATTGGTGAACCCATCACATATCTGGCGCAGACGCGCGACGAGCAATGTC
TGGTGGCCGGCTGTCAGGATAGTGTGGTTCGTCTGCTGGACTGTGAGACC
GGCGGATTACTCTCCGAGTACAGGGGACATCGCGGCGATGACTACCACAT
CGAGTGCGGAATACTGTCAAACGATGCCCAAATAGTCACGGGCTCCAGTG
ATGGAGACGCCTTTGTTTACGACCTGCTCGATGGGAAAGTACTGCAGCGC
ATTCGCATAAGTGATAATGGCCGGCGTCGTCCACTCCTTAGCCACTCATC
CCAAGCGACAGGAAATGCTGTTCGCCAGACGACGGGACATGTATGTCTTC
TCGACAGATTTGCAAATCGAAAGGAGCATTAGCAAGCTTTCTAAAACATT
CGGTTGGGCGGCGGCCCAGGTAGTGGTCTGATCATAATCTAAATCATAAT
CAAATCCAAACTAGCCAAGAGATCTGGCTGCATAGGGCTGGATCTCACCA
ATAAAAAAGCCGGGGGCATCGAGCGTCTTGAACAGACGAAGTGAGATCTC
G
UFO04518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4935-RA | 1083 | CG4935-RA | 60..979 | 9..928 | 4540 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16262649..16263182 | 279..812 | 2670 | 100 | Plus |
| 2L | 23513712 | 2L | 16262338..16262458 | 87..207 | 605 | 100 | Plus |
| 2L | 23513712 | 2L | 16263262..16263371 | 811..921 | 490 | 98.2 | Plus |
| 2L | 23513712 | 2L | 16262200..16262282 | 9..91 | 400 | 98.8 | Plus |
| 2L | 23513712 | 2L | 16262520..16262594 | 206..280 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:41 has no hits.
UFO04518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:14 Download gff for
UFO04518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4935-RA | 78..1001 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:23 Download gff for
UFO04518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4935-RA | 60..983 | 9..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:01 Download gff for
UFO04518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4935-RA | 60..983 | 9..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:01 Download gff for
UFO04518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16262200..16262278 | 9..87 | 100 | -> | Plus |
| 2L | 16262339..16262457 | 88..206 | 100 | -> | Plus |
| 2L | 16262521..16262593 | 207..279 | 100 | -> | Plus |
| 2L | 16262650..16263180 | 280..810 | 100 | -> | Plus |
| 2L | 16263262..16263383 | 811..931 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:23 Download gff for
UFO04518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16262200..16262278 | 9..87 | 100 | -> | Plus |
| arm_2L | 16262339..16262457 | 88..206 | 100 | -> | Plus |
| arm_2L | 16262521..16262593 | 207..279 | 100 | -> | Plus |
| arm_2L | 16262650..16263180 | 280..810 | 100 | -> | Plus |
| arm_2L | 16263262..16263383 | 811..931 | 96 | | Plus |
