UFO04519.5prime Sequence
1127 bp (997 high quality bases) assembled on 2009-06-09
> UFO04519.5prime
CAGTCGACATGGTGCTTCTCCAGGTGAAACGCGGAGACGAGCTTATCTTC
CTCTATGAGACAAGCGTTAAGGAGAAGACCGATACTGTGCTTCGCGAGCT
TGTGGCTCTGCACAATGGTCAACTGAAGATTCAGCGTGTCTGCATGGAGA
TTGAGGAGCTGGCCGAACATGGCACCATGGTGCCGCCTGAAATGATTGGC
CTCAACGAGGAACAGAGGGAAGAGCTCAAGCTTAAGGATGTCTGGGCGGA
TAAGTGCATCCCGTCTGGTGGTTTCACTATCAACAAGGATCCGCTCCTTC
GCCGTAACGGACAGCAGCCAACTGAGGCGATGCAAAAGGTCCTTGCAGGT
GCCATGAACGACGCCAAGGCTATGGTGGATCGGCGCTTAGCTAAATCCTC
AAAGACCTTGACCCCAAAGATCGTTGAGGAGGCGTTGAACCTCCTGCGTG
GTGGTGTCACTATTGTATATCCCATGCAATTGCCGCCCCACGACTCCATA
CGCATGGAGTTCACCAATACCGAGGATCTGACTGGCACCCAGGCCTCCAA
GGAGGTCATCGAACCGTCCAAGGCTCAGTTCTGGTTTGCAGGACACCAGA
TGCTGATGGGGAAGCTAATGAGCGACTATTTGGGTCACAACGACAAAACC
AAGGTGGTCGTGAAGCTGAATCAAATTGGTGAAGGACCACCGGGACGCGA
AGCCGTGATCTCCGATCCCTTGCGTCGCCAGATGATGGCCGAGGCCTATC
GCCGCCAGGAGGAACTCAAGAAACTTGAGCAAGACGATGACGACGAGTAT
CTCAACTCCTCCTGGGCCGACAGCGGCAGTCTGAAACGTCAGCGCATGGT
CTGGAAAATGTTAGATTCCGATTCAGAAAAGCAAGCTTTCTAGACCATTC
GTTTGGCGCGCGGGCCCAGGTAGTGGTCATAATCATAATCATAATCATAT
CATATCACACTAGCCTAGGAGATCCTGGTCATGACTAATGCTTGGGATCT
CACCAAATAAAAAACGCCCCGCCGGCAACGAACGATCTTGACAAATCCCG
GATGGAGTTCTGAGGTCCTTACCTGGAATCATCACAGGAAGTCCAAGGCG
AAGCCTCGAATCAATAGGCCCGCCTGG
UFO04519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18675-RA | 1608 | CG18675-RA | 66..942 | 5..880 | 4285 | 99.3 | Plus |
| tipE-RB | 3938 | CG1232-RB | 2341..2452 | 770..880 | 535 | 99.1 | Plus |
| tipE-RA | 3396 | CG1232-RA | 2487..2598 | 770..880 | 535 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4173949..4174327 | 5..383 | 1835 | 98.9 | Plus |
| 3L | 28110227 | 3L | 4174393..4174665 | 383..655 | 1365 | 100 | Plus |
| 3L | 28110227 | 3L | 4174724..4174842 | 652..770 | 580 | 99.2 | Plus |
| 3L | 28110227 | 3L | 4192190..4192302 | 769..880 | 515 | 99.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:15:56 has no hits.
UFO04519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:16 Download gff for
UFO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18675-RA | 92..978 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:01:36 Download gff for
UFO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18675-RA | 61..947 | 1..886 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:10 Download gff for
UFO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18675-RA | 61..947 | 1..886 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:10 Download gff for
UFO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4173944..4174327 | 1..383 | 98 | -> | Plus |
| 3L | 4174394..4174663 | 384..653 | 100 | -> | Plus |
| 3L | 4174726..4174842 | 654..770 | 99 | -> | Plus |
| 3L | 4192192..4192307 | 771..886 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:01:36 Download gff for
UFO04519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4173944..4174327 | 1..383 | 98 | -> | Plus |
| arm_3L | 4174394..4174663 | 384..653 | 100 | -> | Plus |
| arm_3L | 4174726..4174842 | 654..770 | 99 | -> | Plus |
| arm_3L | 4192192..4192307 | 771..886 | 96 | == | Plus |
