UFO04521.5prime Sequence
1130 bp (978 high quality bases) assembled on 2009-06-09
> UFO04521.5prime
CAGTCGACATGCGCCAGCCCTTCCGCCGAGCCTCCGTCTACCTCCACCTG
CTGTTAATAACCGAGGCCGTGATCGGACTGCTGATCCTGGTGGTGACCGC
CTACTACCACACCGTGCTCACCGGCTATCTATCGGATATTGAGTGCCGCC
TGGTCTACGGCTATCTGTTTGGGATCTACGTGTTTGGCGCCCAGGTGGTG
GTGACCTTTCTCTGCAGCATTGCCATGTGGCGGCGAATTTGGCGGCGTCG
CTGCACGCCGAACATTCGCCTCTTGCTATCCGTGTGGGCCTTCTACTCCT
GCGTAATCATTGCCTCCGGTTTCGGGTGCGTTTGGAATCTTTACCGGGGT
GTCGATGTCCTCGAGAATGCGGCGGACACCTCGCTGACCCGCGGCATCGA
CATGTACTACTCGTGTCCCGAGTGGAAACTCCTGTGGGACGGACTGCAGT
GGCACAAGGAGTGCTGCGGGGTGCATGGCTACAAGGACTGGATGAACGCG
GAGTGGATGCCACGGCGGGAGAATAACTGCACGTCGATGGTCCTGGCACC
CTTCGCCTGCTGCAAGCGCTCCTGCGACAGCTGCTTTAACAATTTCCTGC
CCAGTGAGGGGCAGTCCATCGGTGGCAATAGCCGGCAGCCTTTTCCCGCT
CTCACCGTGGACTCAATCAATGCGAACGGATGCTTGCCTGCGTTCGTTAG
TGCGGTGTGGAACTGCTTTTACATCCTGATGGCGTTATGGGTCCTGGCCC
TTAAGTTTCTGATCGTGCTTTGTTGTATGACCAAGTTCATAGTTCACCGG
CAGAACGAGGGCGATGGCTGCGATAATGTGGGGCTCACGGACGATGATGG
CCATCCCTTGGTCGTGGTGAAATATCCGTGCAACGTGCGCTGTGTGACAA
TTGCCGAGGATGATCTGGTATCCGACAACGTTCCCGATATTAACTACTTG
CAATTGCACGAAATGGACGACGAACCGGGTGATACGCAAGCTTTCTAAAC
ATTCGTTTGGCGCGCGGGCCAGGTAGTGTCTAATCATATCTATCTTAATC
TAATCCACTAGCCTAGGGAGATCTGGCATGACTATGCCTGGATCCCACAT
AAAAGCCGCCACGACGTCTGACCAATCCAT
UFO04521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:51:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp33B-RA | 1111 | CG14936-RA | 63..1035 | 9..981 | 4745 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:51:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11791551..11792303 | 761..9 | 3765 | 100 | Minus |
| 2L | 23513712 | 2L | 11791268..11791376 | 869..761 | 515 | 98.2 | Minus |
| 2L | 23513712 | 2L | 11791101..11791213 | 981..869 | 425 | 95.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:51:42 has no hits.
UFO04521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:18 Download gff for
UFO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp33B-RA | 63..1043 | 9..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:38 Download gff for
UFO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp33B-RA | 63..1043 | 9..989 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:07 Download gff for
UFO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp33B-RA | 63..1043 | 9..989 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:07 Download gff for
UFO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11791093..11791212 | 870..989 | 93 | <- | Minus |
| 2L | 11791268..11791375 | 762..869 | 98 | <- | Minus |
| 2L | 11791551..11792303 | 9..761 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:38 Download gff for
UFO04521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11791093..11791212 | 870..989 | 93 | <- | Minus |
| arm_2L | 11791268..11791375 | 762..869 | 98 | <- | Minus |
| arm_2L | 11791551..11792303 | 9..761 | 100 | | Minus |
