UFO04522.5prime Sequence
1135 bp (1011 high quality bases) assembled on 2009-06-09
> UFO04522.5prime
CAGTCGACATGCCGGCGGACATAGTGACCACGGAGCAGCTGCGCTACCAG
CTCGCCTTCAGTCATGCCATGGAAAGGACGACGAGGCACTGGCAGGAGAC
TTTCGCGTGGTACCCTAAGATGCAGTGCTGCCATTATCAGCGGATTGACC
AGATCTATCTGACGAGTCGCCAGCGGTACGGCGACGGCCACTTCCTCAAG
TACGCCAACCGCAGGCGCCTGGCAAAGAAGTTCGTGGTTACCGCCCAGGA
GGTTGCGGAAGGTTTGGAGGATCTGAAGATGCTGGAGCAAGACGGCATTA
CGGGCCTCAAAGTTGCGGTCACCGAGAACGGGGAGTACGGCCGAATGAAG
CCCTCCAAGCTGTACATGTGCGCAAGCTTTCTAGACCATTCGTTTGGCGC
GCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATC
ACAACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCA
ATAAAAAACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAG
TTCTGAGGTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATA
TCAAATTACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTAATTCATT
AAGCATTCTGCCGACATGGAAGCCATCACAAACGGCATGATGAACCTGAA
TCGCCAGCGGCATCAGCACCTTGTCGCCTTGCGTATAATATTTGCCCATG
GTGAAAACGGGGGCGAAGAAGTTGTCCATATTGGCCACGTTTAAATCAAA
ACTGGTGAAACTCACCCAGGGATTGGCTGAGACGAAAAACATATTCTCAA
TAAACCCCTTTAGGGAAATAGGCCAGGTTTTCACGTAACACGCCACATCT
GCGAATATATGTGTAGAAACTGCCGGAATCGTCGTGGTATTCACTCAGAG
CGATGAAACGTTTCAGTTTGCTCATGGAAACGGGGTAACAGGGTGAAACC
TATCCCAATCACAGCTCACGGTCTTCATTGCATACCGAATTTCGGAATGG
ACATCATCAAGCGCCAAGATTGTGATAACGCCGATAAAACTTGGGCTTAT
TTTTTCTTTACCGGCTCTTAAAAGGGCCGTATATA
UFO04522.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3611-RB | 1126 | CG3611-RB | 253..615 | 9..371 | 1800 | 99.7 | Plus |
| CG3611-RC | 1919 | CG3611-RC | 253..615 | 9..371 | 1800 | 99.7 | Plus |
| CG3611-RA | 765 | CG3611-RA | 313..675 | 9..371 | 1800 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24799110..24799472 | 9..371 | 1800 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:57:38 has no hits.
UFO04522.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:08 Download gff for
UFO04522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3611-RA | 305..675 | 1..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:21 Download gff for
UFO04522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3611-RA | 305..675 | 1..371 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:47:00 Download gff for
UFO04522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3611-RA | 305..675 | 1..371 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:00 Download gff for
UFO04522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24799102..24799472 | 1..371 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:21 Download gff for
UFO04522.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20686625..20686995 | 1..371 | 98 | == | Plus |
