UFO04523.5prime Sequence
1089 bp (897 high quality bases) assembled on 2009-06-09
> UFO04523.5prime
CAGTCGACATGATTAGTGGCTCTGGGAGTCGGACGCCCTCAAATCGACTT
TATTTGTCGCCCGTTCGCCCCACGATGCAGAACAAACGGAGGCTTCTGCG
GGAGTACAGGTCCTACGATGACCTCAGCGAGCACTACCGCATGTTTGGAT
CGCAGTCCCTGGACTCGCTGCAGGATCGCGTGGACATGAATCCCAGTGGC
TGCGATGGCTTATCCACGGACGGACTCGACTTCTGCTCGCAGTCCCACTC
GGGGCTGCTGAGGGAGCACAATTTCAAGATTAAGTCCTACTACTACAACG
TGGGGAACTGCGTACACTGCCGCAAAAGGATCCGCTTCGCCATGGCCAGC
CTGAGGTGTCGGGCGTGTCCGCTCCGCTGCCACATCGGTTGCTGCCGCCA
GCTGACGGTGAACTGCATCCCCCAGCCTCAAATCGGTACGAAGAGAGGAT
GTCTCAGCGATTATGCGCCTCGGGTGGCGCCCATGGTGCCGGCCTTAATT
GTCCATTGTGTAACGGAGATCGAGGCGCGGGGATTGCAGCAGGAGGGACT
CTACCGGGTGTCCTCCACCCGAGAGAAATGCAAACGACTGCGTCGGAAGC
TGCTGCGTGGCAAGTCCACGCCGCATTTGGGCAATAAAGACACCCACACA
CTGTGCTGTTGTGTTAAGGACTTTCTTCGGCAGTTGGTTCACCCTCTGAT
TCCCATTTACCACCGAAGGGATTTCGAGGAGGCCACGCGGCACGAAGATC
GTCTGGCTGTGGAGATGGCGGTATATTTAGCGGTTCTGGAGCTGCATCAG
GCTCACAGGAATACGTTGGCCTTACTTAATGCTTCACTTGCATAAATTGC
CGAAAGTCCTGCTGTCCGCATGACGGTCACCAATCTTGCCGTGTCATCAC
ATCCAACTTCTGTTCGGAGATCTTGGATCTAACCCTCGAAAATGGCGTGC
GCTGTGGCGCCGGTGCTGAAGGTGCTACTTCGGATGCCTGCCGGATTTAG
ACTAAACTCTTGAAGGCCACTCCCTTCCAATTGCTGGGCCGCCCTGATGG
ATGTTGAGAACACGTAACATCACCAGCCACTGAGACACC
UFO04523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RacGAP84C-RB | 1354 | CG2595-RB | 144..1130 | 9..998 | 4590 | 98.1 | Plus |
| RacGAP84C-RA | 1412 | CG2595-RA | 144..1130 | 9..998 | 4590 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7286559..7287227 | 327..998 | 2830 | 96.4 | Plus |
| 3R | 32079331 | 3R | 7286105..7286425 | 9..329 | 1605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:48:53 has no hits.
UFO04523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:10 Download gff for
UFO04523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RacGAP84C-RB | 743..1729 | 9..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:44 Download gff for
UFO04523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RacGAP84C-RA | 144..1130 | 9..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:47 Download gff for
UFO04523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RacGAP84C-RA | 144..1130 | 9..998 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:47 Download gff for
UFO04523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7286105..7286424 | 9..328 | 100 | -> | Plus |
| 3R | 7286561..7287227 | 329..998 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:44 Download gff for
UFO04523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3111827..3112146 | 9..328 | 100 | -> | Plus |
| arm_3R | 3112283..3112949 | 329..998 | 97 | | Plus |
