UFO04525.5prime Sequence
1139 bp (1021 high quality bases) assembled on 2009-06-09
> UFO04525.5prime
CAGTCGACATGAGTGCGGAACCAAGTCCGGTAATGAGTCCCCAGCAGCAG
GCCGAGCGGGAGAAGGTGTACCAGTTGATCATCGAGCTGGCCTATCCTGC
CACGCGGGAGACCGCTCTGCTGGAGCTGAGCAAGAACACCTATGCGGACC
TGGCCCCCATGCTGTGGAAAAGCGTCGGTACCACCTGCACCCTGCTGCAG
GAGATCGTCAACATATACCCCATAATAACGACGCCCGTTTTGAAGGCCAA
CCAGTCGAACCGCGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCT
CGCATCCGGAGACTCGCCCGGCCTTCCTGCGGGACCAGATACCGATGTAC
TTGTACCCCTTCTTGTCGACCACGTTCAAGAGCAGGCCCTTCGAGCAGCT
GCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGACCGGTGATA
CGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTCACTGTCTG
ACCAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCAAT
CCTTGAGAAGATACTGCTCGATGAGATGGGTCTGACGTACATTTGCGAGA
ACCACGATCGCTTCTCGCAGGTGGCCATCACCCTGGGCAAAATGGTCATC
CATATGTTGAAGTTTCCATGCCTCCGGGTGCTGAAGCATGTGGTGCGCTG
CTATCTACTACTTACGGAAAATGCGCGCGCTCGCAGTGCACTTAGAGTGT
GTCTGCCCGATCTGCTGCGTGACGGCACCTTCACGTCGCTCGTCCAACAT
GACACGTGCACCAAGCAGTGGCTGCAGATGCTGCTCAAGAACCTGCAGAC
AAACGCCGTCAACCCAATGGGCTCCTCCGCAAGCTTTCTAGACCATTCGT
TTGGCGCGCGGGCCCAGGTAAGTGGTCATAATCATAATCATAATCATAAT
CATAATCACACTAGCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATCT
CACCATAAAAACGCCCGGCGGGCAACCGGAGCGTCTGAACAAATCCGGAT
GGAGGTTCTGAGGTCATTAACTGGATCTATCACAGGAGTCCAAGCGGAGC
TCGAATATTCATACGCCCCGCCTGCCACTCATCGAGTAC
UFO04525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1r-RA | 1184 | CG9573-RA | 147..1016 | 9..878 | 4320 | 99.8 | Plus |
| CG13102-RB | 1835 | CG13102-RB | 739..1608 | 878..9 | 4320 | 99.8 | Minus |
| Rcd-1-RA | 1612 | CG14213-RA | 482..1285 | 42..845 | 1875 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9013053..9013922 | 878..9 | 4320 | 99.8 | Minus |
| X | 23542271 | X | 19639444..19639815 | 64..435 | 1020 | 84.9 | Plus |
| X | 23542271 | X | 19639934..19640091 | 479..636 | 340 | 81 | Plus |
| X | 23542271 | X | 19640301..19640419 | 727..845 | 280 | 82.4 | Plus |
| X | 23542271 | X | 19640147..19640234 | 635..722 | 215 | 83 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:06:51 has no hits.
UFO04525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-30 09:30:21 Download gff for
UFO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9573-RA | 147..1018 | 5..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:55 Download gff for
UFO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13102-RB | 739..1610 | 5..878 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:08 Download gff for
UFO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13102-RB | 739..1610 | 5..878 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:08 Download gff for
UFO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9013053..9013924 | 5..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:55 Download gff for
UFO04525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9013053..9013924 | 5..878 | 99 | | Minus |
